Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13200 303 / 9e-104 GRAM domain family protein (.1) AT2G22475 179 / 5e-55 GEM GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) AT1G28200 177 / 2e-54 FIP1 FH interacting protein 1 (.1) AT5G23370 138 / 6e-40 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G08350 137 / 1e-39 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT4G01600 137 / 1e-39 GRAM domain family protein (.1.2) AT5G23360 136 / 3e-39 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23350 135 / 4e-38 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT4G40100 127 / 1e-35 GRAM domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031986 [exp] 471 / 6e-170 AT5G13200 302 / 3e-103 GRAM domain family protein (.1) Lus10040539 [exp] 192 / 3e-60 AT1G28200 338 / 6e-118 FH interacting protein 1 (.1) Lus10000640 [exp] 189 / 8e-59 AT1G28200 333 / 5e-116 FH interacting protein 1 (.1) Lus10025728 [exp] 164 / 7e-49 AT2G22475 304 / 4e-103 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10013445 [exp] 160 / 5e-48 AT5G08350 246 / 1e-82 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10017372 [exp] 155 / 3e-46 AT5G08350 238 / 2e-79 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10010279 [exp] 154 / 8e-46 AT2G22475 196 / 3e-62 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10010166 [exp] 149 / 5e-44 AT5G08350 233 / 1e-77 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10035933 [exp] 151 / 4e-43 AT2G22475 265 / 1e-86 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G323300 [exp] 311 / 1e-106 AT5G13200 290 / 2e-98 GRAM domain family protein (.1) Potri.003G165500 [exp] 279 / 5e-94 AT5G13200 328 / 3e-113 GRAM domain family protein (.1) Potri.003G165400 [exp] 279 / 7e-94 AT5G13200 350 / 6e-122 GRAM domain family protein (.1) Potri.003G165600 [exp] 278 / 8e-94 AT5G13200 323 / 1e-111 GRAM domain family protein (.1) Potri.003G165700 [exp] 277 / 3e-93 AT5G13200 326 / 1e-112 GRAM domain family protein (.1) Potri.014G109700 [exp] 177 / 5e-55 AT1G28200 221 / 1e-72 FH interacting protein 1 (.1) Potri.005G159100 [exp] 177 / 6e-54 AT1G28200 295 / 2e-100 FH interacting protein 1 (.1) Potri.002G184100 [exp] 167 / 2e-51 AT1G28200 219 / 7e-72 FH interacting protein 1 (.1) Potri.002G102800 [exp] 169 / 3e-51 AT1G28200 325 / 3e-112 FH interacting protein 1 (.1) Potri.005G088200 [exp] 162 / 4e-49 AT5G08350 230 / 1e-76 GRAM domain-containing protein / ABA-responsive protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF02893 [flax] [poplar] GRAM GRAM domain
Representative CDS sequence Show only first row Show all	>Lus10035154 pacid=23162604 polypeptide=Lus10035154 locus=Lus10035154.g ID=Lus10035154.BGIv1.0 annot-version=v1.0 ATGAACCCATTCCTTTCTACTATGGAAAATCATCCACCACCACCACCACCATCATCATCATCTCCTTCGCCACCACCGCCGCCGACTACAGAACAATGGG GCACATACGTCATGGGACCACCGGCGGCTCCTTCCTCCCATCCCGACAACCAGAAAGCAGCTGCTTTTTGGGGCGCTAATAGTAATTATACTCCCTCATC TTCCTCCACAACCACCACAGCTCCTCCTGCCGCCGCCGGTCAGAACCAACATCCTTACGTGGTCCACTCTCCCGCCGAAAAACCCGCCGCCAACCCCATG GATTCCATCCTCCACGTCTTCAATTCCTGGTCCAACAAGGCCGAGTCCCTAGCTAATAACATCTGGCACAACCTGAAGACGAATTCCTCGGTCTCGGAAG CAGCGTGGGGGAAGATGAATCTGACGGCCAAGGTGATCACAGAAGGCGGATTCGAGTCTCTGTACAAGCTGACTTTTGCCACCTACCCTAACGAGAAGCT GAAGAAGAGATTCGCCTGCTATCTCTCTACAACGACGGGACCGGTGGCCGGGACTCTGTATCTGTCGAACGTCCAGGCGGCGTTTTGCAGCGATCGGCCT CTGTCGTTCACAGCGCCGTCGGGGCAGCAGACATGGAGCTACTACAAGGTAGCGATGCCGCTGGAGAAGATCCGGAGCGTGAATCCGGTGGTGATGAGGG AGAAGCCGGCGTCGGAGAAGTATATTCAGTTGGTGACGGTGGAAGGTCATGATTTCTGGTTTATGGGGTTTGTTAATTACGAGAAGGCTTGTCGCCATTT GACTAACGGCATCTCCGGTTCTCCGGTAGCCGGTTAA
AA sequence Show only first row Show all	>Lus10035154 pacid=23162604 polypeptide=Lus10035154 locus=Lus10035154.g ID=Lus10035154.BGIv1.0 annot-version=v1.0 MNPFLSTMENHPPPPPPSSSSPSPPPPPTTEQWGTYVMGPPAAPSSHPDNQKAAAFWGANSNYTPSSSSTTTTAPPAAAGQNQHPYVVHSPAEKPAANPM DSILHVFNSWSNKAESLANNIWHNLKTNSSVSEAAWGKMNLTAKVITEGGFESLYKLTFATYPNEKLKKRFACYLSTTTGPVAGTLYLSNVQAAFCSDRP LSFTAPSGQQTWSYYKVAMPLEKIRSVNPVVMREKPASEKYIQLVTVEGHDFWFMGFVNYEKACRHLTNGISGSPVAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13200			GRAM domain family protein (.1...		Lus10035154 [exp]	0	1
AT5G35735			Auxin-responsive family protei...		Lus10012350 [exp]	3.2	0.8652
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10026409 [exp]	3.7	0.8420
AT5G13200			GRAM domain family protein (.1...		Lus10031986 [exp]	6.9	0.8416
AT1G21010			unknown protein		Lus10035664 [exp]	7.7	0.8327
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10011820 [exp]	9.2	0.8281
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007632 [exp]	9.9	0.7997
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10021263 [exp]	10.4	0.8349
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10041600 [exp]	13.3	0.7976
AT2G19130			S-locus lectin protein kinase ...		Lus10032944 [exp]	14.1	0.7826
AT3G15518			unknown protein		Lus10037893 [exp]	14.5	0.7978

Compare expression of checked genes

Lus10035154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.