Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26780 442 / 5e-154 MEF14 mitochondrial editing factor 14, Phosphoglycerate mutase family protein (.1) AT1G12850 426 / 8e-148 Phosphoglycerate mutase family protein (.1) AT5G04120 52 / 2e-07 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031987 [exp] 687 / 0 AT3G26780 498 / 3e-176 mitochondrial editing factor 14, Phosphoglycerate mutase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G145900 [exp] 477 / 1e-167 AT3G26780 452 / 3e-158 mitochondrial editing factor 14, Phosphoglycerate mutase family protein (.1) Potri.002G236600 [exp] 470 / 5e-165 AT1G12850 463 / 1e-162 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10035155 pacid=23162489 polypeptide=Lus10035155 locus=Lus10035155.g ID=Lus10035155.BGIv1.0 annot-version=v1.0 ATGGGCGCTTCTCAATCAGCCCACGAGGCCGAAGAGCTAGCAAGTGAAGACGAAGAGGAGGAAGAAGACGACGACAGAGAAGAAGATGGTCTCACCGGAG ACAGCAGAGTCAATGCCGCCGGCACCGAGAACTCGTTGGTTAAAAAGCTTCTGGAACAAGAGCCCGAGATGCTGCCCTGTTACGCATCAGCTTCTCCGCT CTCTCCTCAACTCTCGTCTCTCGGCACTCCTCGCCTTGGCCCTTCCATTAAAGTCTGGGATCCTTACAACGTCCTCGGCCCTCCGCCGCCGCCGCCTCCA ATTCCTGTTTTCTCCCGGAGCTACTCCATGGCCAGTGCCGGCGGCGGGAGCGGCGACGATGACCACCGGACCGTGACGGAGGTGGTTTTGGTTAGTCATG GTGAGTGTGAGCTGAACTTGAGGCCTGATTTGGTTGGCGGAAGGTGTCATATGGCTGGATTGAGTCCTATTGGGAAGCGCCAAGCTAGGGCATTGGCTGT TTTTCTTAACTCGCAAGGGGTTAGGTTCAGTGCCGTTTATTCTTCGCCTCTTGACCGGGCAAGATCAATGGCTGCTTTGGTCTGTCAGGAAATGAGTTTT TCCAAGGAACAAATACAAACCTCAGATGAACTTTCAGAGATGAGCCTGGGGCTCTGGGAGGGGTGCTCCCAGTCAGAGATATATACGCCAGAAGTTGTTA GTTTGGTTGAAAGTTCTCAGCCTGATTTCTGTGCACCATCTGGGGAGTCACTTCGACAAGTGGAATTCAGGATGGTTCAGTTCTTGAATTTGACTATCGC TAGGTTACCTGAAAAGTTGAGGGCTGATTTCTCAATGCATCATCAGAATGATAACCAGGGAGGAGGGTTTGCTCATGACAGAGATGGCCAATCCCCCCTA CCTTCTCCCCATTGGGATGCGGTGAATCGACACCACCGCCGCCCAGGTCTCACGAGGAAAAAGTCCGGGAAGAGCAGGCTGCAATATGTCACTTCCACCG GGAATCAAGAGGTCGGAGAGGATGAGACCTCTCCTAGCGAAACCAACCAGCGGATCAGCTCGATTACTGATGGTTTAAGCATCCCGGGCTCTTCCCCATT ATCATCATTCTCTTCGTGTGTCGGTGTTTTCACTCATTCAATCCCCATCAAGTGCCTCCTCACAGGTGTCCTAGGCTGCAACCCTGTAATGTCCCACAAA ATCTGCATCGAAGATTCCTCTGTAACGGTGTTGCAGCATTCTCTTCAAACAGGCTGGCAGATAAAGCGCCTGAACGATACAGCACATCTGCGGCTTCTTT AA
AA sequence Show only first row Show all	>Lus10035155 pacid=23162489 polypeptide=Lus10035155 locus=Lus10035155.g ID=Lus10035155.BGIv1.0 annot-version=v1.0 MGASQSAHEAEELASEDEEEEEDDDREEDGLTGDSRVNAAGTENSLVKKLLEQEPEMLPCYASASPLSPQLSSLGTPRLGPSIKVWDPYNVLGPPPPPPP IPVFSRSYSMASAGGGSGDDDHRTVTEVVLVSHGECELNLRPDLVGGRCHMAGLSPIGKRQARALAVFLNSQGVRFSAVYSSPLDRARSMAALVCQEMSF SKEQIQTSDELSEMSLGLWEGCSQSEIYTPEVVSLVESSQPDFCAPSGESLRQVEFRMVQFLNLTIARLPEKLRADFSMHHQNDNQGGGFAHDRDGQSPL PSPHWDAVNRHHRRPGLTRKKSGKSRLQYVTSTGNQEVGEDETSPSETNQRISSITDGLSIPGSSPLSSFSSCVGVFTHSIPIKCLLTGVLGCNPVMSHK ICIEDSSVTVLQHSLQTGWQIKRLNDTAHLRLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26780		MEF14	mitochondrial editing factor 1...		Lus10035155 [exp]	0	1
AT3G26780		MEF14	mitochondrial editing factor 1...		Lus10031987 [exp]	3.5	0.9021
AT2G01720			Ribophorin I (.1)		Lus10040410 [exp]	9.2	0.9163
AT5G08680			ATP synthase alpha/beta family...		Lus10034632 [exp]	12.4	0.9156
AT4G33510		DHS2	3-deoxy-d-arabino-heptulosonat...		Lus10001002 [exp]	12.7	0.8494
AT4G35890			winged-helix DNA-binding trans...		Lus10014254 [exp]	15.8	0.9119
AT4G15080			DHHC-type zinc finger family p...		Lus10027339 [exp]	16.6	0.8727
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031186 [exp]	20.8	0.9081
AT5G04520			Protein of unknown function DU...		Lus10028831 [exp]	21.6	0.9016
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10026670 [exp]	23.0	0.8768
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10010370 [exp]	24.1	0.9099

Compare expression of checked genes

Lus10035155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.