Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26782 200 / 1e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13770 114 / 3e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G01580 108 / 1e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55740 108 / 2e-27 CRR21 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33760 108 / 2e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 106 / 1e-26 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G13230 105 / 2e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 103 / 9e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G34400 103 / 1e-25 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G21300 103 / 1e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031989 [exp] 296 / 8e-97 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 110 / 8e-28 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010320 [exp] 108 / 1e-27 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10035788 [exp] 106 / 2e-26 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10035164 [exp] 105 / 3e-26 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031028 [exp] 105 / 4e-26 AT4G19191 727 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031994 [exp] 105 / 4e-26 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025490 [exp] 103 / 1e-25 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002552 [exp] 100 / 1e-25 AT2G22410 299 / 2e-97 SLOW GROWTH 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G322100 [exp] 199 / 1e-60 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G043400 [exp] 120 / 9e-32 AT2G33760 775 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G161800 [exp] 119 / 2e-31 AT2G03380 786 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G052300 [exp] 117 / 2e-30 AT2G33760 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G074000 [exp] 114 / 3e-29 AT4G39952 892 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G088600 [exp] 110 / 3e-28 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G186500 [exp] 110 / 5e-28 AT3G23330 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G211400 [exp] 108 / 1e-27 AT3G11460 772 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 107 / 4e-27 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 106 / 1e-26 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10035156 pacid=23162443 polypeptide=Lus10035156 locus=Lus10035156.g ID=Lus10035156.BGIv1.0 annot-version=v1.0 ATGGAAGTAGTGATGAGGAAGAGGAGATGGCCGTCTCGTCTTTCTGTATTGGGGATGACTGAGGGTCTACATGGCTTTATTGTCAAGTTGGGATTCGATG ATGAAGTGAGAGTTGCTAATACTATGCTTACTGCATATGCCAAGGGTGGTGCTGTGGGAATGTCTAGAAAGGTGTTCAACGAAATTAGTGAGAGAGACTC AGTATCTTGGAATTCTATTATGGCGATGTATGCTCAAAATGGCTTATCCGGGGAGGCATTTGAAGTGTTCAATGCAATGGTTAAAGGTGGCGTATCGGAA TACAATGCAGTGACATTATCTACTCTATTGTTAGCTTCTGCTCATTCTGGGTCTTTGCGAGCAGGCAAGTGTATTCATGATCAGGCTATAAAGATGGGAA TCCTGGATAATGTAGTGGTGGGAACCTCTGTCATTGATATGTACTGCAAATGTGGGAAAGTTCAAATGGCTAGAAAGTCATTTGATGGTATGAAGGAGAA AACTGTAAGATCTTGGACAGCTATGATTAGCGGTTATGGTATGCAGGTTTCGCAATGGAAGCCTTGGATGTTTTCTATGAGATGA
AA sequence Show only first row Show all	>Lus10035156 pacid=23162443 polypeptide=Lus10035156 locus=Lus10035156.g ID=Lus10035156.BGIv1.0 annot-version=v1.0 MEVVMRKRRWPSRLSVLGMTEGLHGFIVKLGFDDEVRVANTMLTAYAKGGAVGMSRKVFNEISERDSVSWNSIMAMYAQNGLSGEAFEVFNAMVKGGVSE YNAVTLSTLLLASAHSGSLRAGKCIHDQAIKMGILDNVVVGTSVIDMYCKCGKVQMARKSFDGMKEKTVRSWTAMISGYGMQVSQWKPWMFSMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26782			Tetratricopeptide repeat (TPR)...		Lus10035156 [exp]	0	1
AT2G46050			Pentatricopeptide repeat (PPR-...		Lus10036375 [exp]	12.6	0.8132
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10033496 [exp]	23.0	0.8089
AT3G15140			Polynucleotidyl transferase, r...		Lus10009194 [exp]	49.2	0.8023
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026681 [exp]	50.0	0.7901
AT5G40410			Tetratricopeptide repeat (TPR)...		Lus10005637 [exp]	57.1	0.7635
AT4G35130			Tetratricopeptide repeat (TPR)...		Lus10035619 [exp]	64.9	0.7669
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10011563 [exp]	69.0	0.7536
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Lus10012091 [exp]	86.1	0.7748
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10043010 [exp]	88.0	0.7704
AT1G12950		RSH2	root hair specific 2 (.1)		Lus10036853 [exp]	92.6	0.7142

Compare expression of checked genes

Lus10035156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.