Plant FIBer expression Database

Lus10035158 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G322200
[exp]
89 / 3e-21 AT1G03080 69 / 8e-13 kinase interacting (KIP1-like) family protein (.1)
Potri.017G060701
[exp]
55 / 1e-09 ND /
Potri.003G164200
[exp]
45 / 1e-05 AT1G03080 109 / 1e-26 kinase interacting (KIP1-like) family protein (.1)
PFAM info
Representative CDS sequence
>Lus10035158 pacid=23162541 polypeptide=Lus10035158 locus=Lus10035158.g ID=Lus10035158.BGIv1.0 annot-version=v1.0
ATGCTGGATGAGGAGTTTGGTTCCTCTTACCGTTGCTTTGCTGAAAGATGTGACCAGCTGAATTTCGCTTCAAGTCATGTTACTAACTCAATGTCTCCTC
ATCCTCTTCCGTATCTGAATGCAAGAAACGATCTGGCATCTAAAGGAAGCTCTGATGATCTTGCCCTGGCAGCTTCATGTTCTTATCAGCATGTCGACAG
TGATCTCAATGTAAAACAAGGCAACACCAACATCAATTTTGAGTTGCTCAAGAAGCTTGCCAACGAGTGGGCTCCAATTGGATCAGGCAATGTCCAAACT
GAAAGTATGCAAGACTTGGAACCGATTCAAACAGATGGCAACATCATGGATGATGAGGTAATCATGAAAATAATCGGCCAGTCTATGCTTCACGATGGGG
AAACCGACTGGCCTGAGCTCAAGTTTCAAGTTGCAAAGCTGATGGAGGAGACTCTATGGCAACAGGCAGAGTTGGTAAGGAGAAATGCTGAGAAGAAATT
GACTATACATAGGCTCCAGTTGCAGGTGGAACAGTTGAAGCGTCAGAACATGGCCCTTCAGGATTCTATTAGCTTCTTCATAATGGGGGGAAAACGTCAC
CGCTGTTTGACTTCAAAATTACACCAGCTTTGGGATAAGCTGTTCAGGAGAGATCAATGA
AA sequence
>Lus10035158 pacid=23162541 polypeptide=Lus10035158 locus=Lus10035158.g ID=Lus10035158.BGIv1.0 annot-version=v1.0
MLDEEFGSSYRCFAERCDQLNFASSHVTNSMSPHPLPYLNARNDLASKGSSDDLALAASCSYQHVDSDLNVKQGNTNINFELLKKLANEWAPIGSGNVQT
ESMQDLEPIQTDGNIMDDEVIMKIIGQSMLHDGETDWPELKFQVAKLMEETLWQQAELVRRNAEKKLTIHRLQLQVEQLKRQNMALQDSISFFIMGGKRH
RCLTSKLHQLWDKLFRRDQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10035158
[exp]
0 1
AT2G20362 unknown protein Lus10024963
[exp]
3.0 0.9471
AT1G76770 HSP20-like chaperones superfam... Lus10028577
[exp]
6.0 0.9407
AT3G52770 ZPR3 LITTLE ZIPPER 3, protein bindi... Lus10021375
[exp]
6.4 0.8905
AT4G17540 unknown protein Lus10040155
[exp]
6.7 0.8874
AT1G54400 HSP20-like chaperones superfam... Lus10013655
[exp]
7.3 0.9285
Lus10037173
[exp]
9.0 0.9379
AT1G27180 disease resistance protein (TI... Lus10007831
[exp]
9.7 0.9359
AT4G37445 unknown protein Lus10001408
[exp]
11.5 0.9361
AT1G35470 SPla/RYanodine receptor (SPRY)... Lus10006084
[exp]
12.1 0.9245
AT1G31500 DNAse I-like superfamily prote... Lus10026203
[exp]
16.9 0.8439

Lus10035158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.