Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12840 612 / 0 ATVHA-C, DET3 DE-ETIOLATED 3, ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C, vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031990 [exp] 696 / 0 AT1G12840 665 / 0.0 DE-ETIOLATED 3, ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C, vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G061100 [exp] 612 / 0 AT1G12840 645 / 0.0 DE-ETIOLATED 3, ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C, vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) (.1) Potri.001G322500 [exp] 608 / 0 AT1G12840 625 / 0.0 DE-ETIOLATED 3, ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C, vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03223 [flax] [poplar] V-ATPase_C V-ATPase subunit C
Representative CDS sequence Show only first row Show all	>Lus10035159 pacid=23162414 polypeptide=Lus10035159 locus=Lus10035159.g ID=Lus10035159.BGIv1.0 annot-version=v1.0 ATGGCGTCTAGGTATTGGGTCGTCTCTCTCCCGGTGAAGGACTCCGCTTCTACCCTATGGAACCGTCTACAGGACCAAATCTCCAGGCATTCCTTCGACA CTCCTCTCTACAGATTCAACATTCCTAATCTCCGTGTCGGAACTCTGGATTCTCTCCTCTCCCTCAGTGATGACCTGCTCAAGTCGAACAGCTTCCTGGA GGCCGTCTCTCACAAGATTAGGAGACAGATCGAGGATTTGGATAGAATTTCTGGTGCTGAAAGCAATGCTCTAACTGTTGACGGTGTGCCGGTCGATTCC TACCTCACCAGGTTTGTTTGGGATGAAGCGAAGTATCCTACTATGTCACCTCTTAAGGAGATTGTTGATGGGATCCACAGTTCAGTGGCAAAGATTGAAG ATGATCTCAAGGTTCGTGTGGCTGAGTATAACAATGTACGCAGTCAGCTTAATGTTATCAACCGCAAACAAAGTGGAAGTTTGGCTGTTCGTGATCTCTC CAATTTGGTGAAACCGGATGACATCATCTCATCTGAACATCTTGAAACTCTCCTTGCTATTGTCCCCAAGTATTCACAGAAGGACTGGTTAGCTAGCTAC GAAACACTGACTAATTATGTGGTCCCCAGGTCGTCCAAGAAGCTGTTTGAAGACAACGAATATGCTCTTTACACTGTGACGCTCTTCCGCCGTGTTGCTG ACAATTTCAGAACAAGTTCTCGCGAAAAGGGGTTCCAAGTCCGTGATTTTGAATACAGCTCCGAAGCACAAGAGGATAGGAAGCAAGAGATGGACAAACT AGTTCAAGATCAAGAAAGTTTGAGAAACTCTCTTTTGCAATGGTGTTATACTAGCTATGGGGAGGTGTTTAGCTCCTGGATGCACTTCTGTGCTGTGCGT GTCTTTTCAGAGAGCATATTGAGATACGGATTGCCACCAAATTTCTTGTCTTGTGTGTTAGCTCCAGGCCCAAAAAGTGAGAAGAAAGTACGCTCAATCC TCGAGGGGCTGTGTGACACTGCAAACAGCACATTCTGGAAATTGGAAGAGGAAGCAGGAGCTGGAATGGCAGCCCTCGGAGGGGATGGTGATGGACATGT GTACGTGTCGTTCACGATCAATCTTGCCTGA
AA sequence Show only first row Show all	>Lus10035159 pacid=23162414 polypeptide=Lus10035159 locus=Lus10035159.g ID=Lus10035159.BGIv1.0 annot-version=v1.0 MASRYWVVSLPVKDSASTLWNRLQDQISRHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFLEAVSHKIRRQIEDLDRISGAESNALTVDGVPVDS YLTRFVWDEAKYPTMSPLKEIVDGIHSSVAKIEDDLKVRVAEYNNVRSQLNVINRKQSGSLAVRDLSNLVKPDDIISSEHLETLLAIVPKYSQKDWLASY ETLTNYVVPRSSKKLFEDNEYALYTVTLFRRVADNFRTSSREKGFQVRDFEYSSEAQEDRKQEMDKLVQDQESLRNSLLQWCYTSYGEVFSSWMHFCAVR VFSESILRYGLPPNFLSCVLAPGPKSEKKVRSILEGLCDTANSTFWKLEEEAGAGMAALGGDGDGHVYVSFTINLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10035159 [exp]	0	1
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10031990 [exp]	1.0	0.9118
AT3G49720			unknown protein		Lus10039648 [exp]	2.0	0.8806
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10019925 [exp]	2.4	0.8710
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10026651 [exp]	2.8	0.8360
AT1G30630			Coatomer epsilon subunit (.1)		Lus10023385 [exp]	3.5	0.8494
AT4G38690			PLC-like phosphodiesterases su...		Lus10025062 [exp]	4.7	0.8335
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10009419 [exp]	6.5	0.8135
AT1G05170			Galactosyltransferase family p...		Lus10015107 [exp]	6.5	0.8469
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10022785 [exp]	7.7	0.8478
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10030672 [exp]	8.0	0.8187

Compare expression of checked genes

Lus10035159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.