Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26810 870 / 0 AFB2 auxin signaling F-box 2 (.1) AT1G12820 847 / 0 IPS1, AFB3 auxin signaling F-box 3 (.1) AT3G62980 691 / 0 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) AT4G03190 646 / 0 ATGRH1, ATGER1, AFB1, GRH1 AUXIN SIGNALING F BOX PROTEIN 1, GRR1-like protein 1 (.1) AT5G49980 568 / 0 AFB5 auxin F-box protein 5 (.1) AT4G24390 558 / 0 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2) AT2G39940 273 / 6e-84 COI1 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) AT4G15475 98 / 3e-21 F-box/RNI-like superfamily protein (.1) AT5G67250 74 / 1e-13 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT1G21410 59 / 2e-09 SKP2A F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035161 [exp] 931 / 0 AT3G26810 770 / 0.0 auxin signaling F-box 2 (.1) Lus10031991 [exp] 837 / 0 AT3G26810 635 / 0.0 auxin signaling F-box 2 (.1) Lus10006738 [exp] 667 / 0 AT1G12820 647 / 0.0 auxin signaling F-box 3 (.1) Lus10020086 [exp] 662 / 0 AT3G62980 644 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10018426 [exp] 652 / 0 AT3G62980 634 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10018425 [exp] 604 / 0 AT3G62980 593 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10011262 [exp] 592 / 0 AT3G62980 588 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10011260 [exp] 377 / 6e-127 AT3G62980 397 / 2e-134 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10011261 [exp] 257 / 8e-83 AT1G12820 241 / 4e-77 auxin signaling F-box 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G061600 [exp] 988 / 0 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.001G323100 [exp] 985 / 0 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.004G033900 [exp] 661 / 0 AT1G12820 654 / 0.0 auxin signaling F-box 3 (.1) Potri.014G134800 [exp] 657 / 0 AT3G62980 947 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.002G207800 [exp] 657 / 0 AT3G62980 937 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.011G042400 [exp] 655 / 0 AT3G62980 649 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.002G102700 [exp] 573 / 0 AT5G49980 911 / 0.0 auxin F-box protein 5 (.1) Potri.005G159300 [exp] 572 / 0 AT5G49980 934 / 0.0 auxin F-box protein 5 (.1) Potri.010G192900 [exp] 244 / 9e-73 AT2G39940 790 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.008G064400 [exp] 242 / 4e-72 AT2G39940 794 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035160 pacid=23162515 polypeptide=Lus10035160 locus=Lus10035160.g ID=Lus10035160.BGIv1.0 annot-version=v1.0 ATGAACTACTTCCCGGATGAAGTTTTGGAGCACATCTTCGAGTTCGTGGCGACCCACAAGAACAGAAACTCAGTTTCCCAGGTTTGTAAATTGTGGTACA GGATCGAGAGCTACAGTAGGCAGAGGGTGTTCATAGGGAACTGCTATGCGATTAGTCCGGAGAGGGTGGTTGAGAGGTTCCCTGGTCTGAAATCCATTAC TTTGAAAGGGAAGCCTCATTTTGCTGACTTCAATCTGGTGCCTCCTGACTGGGGAGGCTTTGTTTATCCATGGATCGAGGCCTTCGCCAGGAACCGGGTC GGGTTGGAGGAGCTCCGGCTGAAGAGGATGGTTGTCACTGATGAATGCTTGGAGTTGCTGTCTACTTCTTTCCCTAATTTCAAGTCTTTGGTTCTGGTGA GTTGTGAAGGCTTCACTACTGATGGCCTAGCTGCTGTTGCTGCTAACTGTAGGAATCTGAAGGAGCTGGACTTGCAAGAGAATGACGTTGAAGATCACAG AGGGCATTGGCTTAGCTGCTTCCCTGACAGCAGTACCTCTCTTGTTTCCCTCAATTTTGCATGCCTCAAAGGAGATATTAATTTAGCAGCCCTGGAGAGG CTTGTAGCAAGATCCCCCAACCTGAGGAGCTTGAGGCTAAGTCGTGCCGTGCCACTTGATGTGCTTCAGAGGATACTGATCCGTGCTCCCCAGTTGGTGG AGTTGGGTGTGGGTTCTTATCTTCACGATCCAGAGTCCGAGTGTTATGATAATCTTGCGGCTGCCATTCAGAAGTGCAAGTCTGTTAGGAGTCTATCTGG ATTCTTGGATGTTGCTCCCCATTGCCTAGCAGCTTTCCATGTCATCTGCCCGAACTTAACCACCTTGAACTTGAGTTATGCCCCAGGAATTCATGGCAGT GAGCTTATGAAGCTAATTCGTCACTGTAGGAAACTTCAGCGATTATGGATACTGGATTGCATTGGTGATAAAGGACTCGAGGTTGTAGCTGATACTTGTA AAGATTTGGAGGAGTTGAGGGTCTTTCCTTCTGATCCCTTTGTTGGACAAGCGACTGTAACAGAAGAAGGCCTTGTTGCCATCTCAAGAGGTTGCCGGAA GCTTAATTCAATACTCTACTTCTGTCAGCAGATGACAAATGCTGCACTGATAACAGTTGCAAAAAACTGTCCGTATTTCATAAGGTTCAGGCTGTGCATT CTGGATCCCACAAAACCAGATGCTGCTACCCAGCAGCCACTGGATGAAGGTTTTGGGGCGATCGTTCGAGAATGCAAGGATCTGAAGCGCTTGTCACTTT CCGGCCTTCTGACCGACCAAGTTTTCCAGTACATTGGGATGTACGCTTCTCAGCTGGAGATGCTGTCGATAGCGTTTGCAGGGGACAGTGACAAAGGGAT GCAGTATGTGCTGGACGGGTGCAAGAAGCTGAGGAAGCTCGAGATAAGGGACAGCCCGTTCGGGAATGCAGCACTTCTCATGGATGTGGGGAAGTACGAG ACAATGCGATCCCTTTGGATGTCGGCCTGTGATGTCACGCTTGGAGGCTGCAAAGTTTTAGCCAAGAGGATGCCGGGGCTGAACGTGGAGATCATGAACG AGAATGATCAGATGGAGTTTGGGGACGATGATCGGCAGAAGGTGGACAAGATGTACCTGTATCGAACGCTGGCCGGACAAAGGAGAGATGCACCTGGATT CGTCTGGACACTGTAA
AA sequence Show only first row Show all	>Lus10035160 pacid=23162515 polypeptide=Lus10035160 locus=Lus10035160.g ID=Lus10035160.BGIv1.0 annot-version=v1.0 MNYFPDEVLEHIFEFVATHKNRNSVSQVCKLWYRIESYSRQRVFIGNCYAISPERVVERFPGLKSITLKGKPHFADFNLVPPDWGGFVYPWIEAFARNRV GLEELRLKRMVVTDECLELLSTSFPNFKSLVLVSCEGFTTDGLAAVAANCRNLKELDLQENDVEDHRGHWLSCFPDSSTSLVSLNFACLKGDINLAALER LVARSPNLRSLRLSRAVPLDVLQRILIRAPQLVELGVGSYLHDPESECYDNLAAAIQKCKSVRSLSGFLDVAPHCLAAFHVICPNLTTLNLSYAPGIHGS ELMKLIRHCRKLQRLWILDCIGDKGLEVVADTCKDLEELRVFPSDPFVGQATVTEEGLVAISRGCRKLNSILYFCQQMTNAALITVAKNCPYFIRFRLCI LDPTKPDAATQQPLDEGFGAIVRECKDLKRLSLSGLLTDQVFQYIGMYASQLEMLSIAFAGDSDKGMQYVLDGCKKLRKLEIRDSPFGNAALLMDVGKYE TMRSLWMSACDVTLGGCKVLAKRMPGLNVEIMNENDQMEFGDDDRQKVDKMYLYRTLAGQRRDAPGFVWTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10035160 [exp]	0	1
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Lus10038033 [exp]	3.0	0.7977
AT1G60670			Protein of unknown function (D...		Lus10030566 [exp]	3.7	0.7999
AT3G49350			Ypt/Rab-GAP domain of gyp1p su...		Lus10022356 [exp]	4.2	0.8057
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030581 [exp]	6.7	0.7676
AT2G25570			binding (.1.2.3)		Lus10030074 [exp]	12.0	0.7034
AT4G00525			unknown protein		Lus10037852 [exp]	12.4	0.7014
AT1G60670			Protein of unknown function (D...		Lus10012911 [exp]	19.8	0.7569
AT2G30120			unknown protein		Lus10042267 [exp]	20.8	0.7091
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10040775 [exp]	22.4	0.7083
AT1G01290		CNX3	cofactor of nitrate reductase ...		Lus10033117 [exp]	28.5	0.7359

Compare expression of checked genes

Lus10035160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.