Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26810 746 / 0 AFB2 auxin signaling F-box 2 (.1) AT1G12820 734 / 0 IPS1, AFB3 auxin signaling F-box 3 (.1) AT3G62980 577 / 0 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) AT4G03190 538 / 0 ATGRH1, ATGER1, AFB1, GRH1 AUXIN SIGNALING F BOX PROTEIN 1, GRR1-like protein 1 (.1) AT5G49980 476 / 7e-163 AFB5 auxin F-box protein 5 (.1) AT4G24390 459 / 2e-156 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2) AT2G39940 226 / 1e-66 COI1 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) AT4G15475 90 / 9e-19 F-box/RNI-like superfamily protein (.1) AT5G67250 71 / 6e-13 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT1G77000 60 / 1e-09 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035160 [exp] 949 / 0 AT3G26810 894 / 0.0 auxin signaling F-box 2 (.1) Lus10031991 [exp] 658 / 0 AT3G26810 635 / 0.0 auxin signaling F-box 2 (.1) Lus10006738 [exp] 558 / 0 AT1G12820 647 / 0.0 auxin signaling F-box 3 (.1) Lus10020086 [exp] 553 / 0 AT3G62980 644 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10018426 [exp] 548 / 0 AT3G62980 634 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10018425 [exp] 510 / 6e-177 AT3G62980 593 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10011262 [exp] 502 / 1e-173 AT3G62980 588 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10011260 [exp] 369 / 2e-124 AT3G62980 397 / 2e-134 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10014836 [exp] 228 / 4e-67 AT2G39940 827 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G061600 [exp] 848 / 0 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.001G323100 [exp] 836 / 0 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.002G207800 [exp] 562 / 0 AT3G62980 937 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.004G033900 [exp] 553 / 0 AT1G12820 654 / 0.0 auxin signaling F-box 3 (.1) Potri.014G134800 [exp] 553 / 0 AT3G62980 947 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.011G042400 [exp] 546 / 0 AT3G62980 649 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.005G159300 [exp] 473 / 2e-161 AT5G49980 934 / 0.0 auxin F-box protein 5 (.1) Potri.002G102700 [exp] 471 / 1e-160 AT5G49980 911 / 0.0 auxin F-box protein 5 (.1) Potri.008G064400 [exp] 213 / 1e-61 AT2G39940 794 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.010G192900 [exp] 212 / 2e-61 AT2G39940 790 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035161 pacid=23162586 polypeptide=Lus10035161 locus=Lus10035161.g ID=Lus10035161.BGIv1.0 annot-version=v1.0 ATGAACCACTTCCCCGATGAGGTTTTGGAGCACATCTTCAAATTCGTGGCGACTCACCAGGACAGGAACTCGGTTTCCCAGGTCTGTAAATTGTGGCACA GGATCGAGAGTTACAGTAGGCAGAAAGTGTTCATAGGGAACTGCTATGCGATTAGTCCGGAGAGGGTGGTTGGGAGGTTCCCTGGTCTGAAATCCATTAC TTTGAAGGGGAAGCCTCATTTCGCTGACTTCAATCTGGTTCCTCCTGACTGGGGAGGCTTTGTTTACCCATGGATCGAGGCCTTTGCAAGGAACCGGGTC GGGTTGGAGGAGCTCCGGCTGAAGAGGATGGTTGTTTCTGATGAAAGCTTGAAGTTGCTGTCGACTTCTTTCCCTAATTTCAAGTCTTTGGTTCTGGTGA GCTGTGAAGGCTTCACTACTGATGGCCTTGTTGCTGTTGCTGCTAATTGTAGGCATTTGAAGGAGCTGGACTTGCAAGAGAATGACGTTGAAGATCACAG AGGGCATTGGCTTAGCTGCTTCCCTGACAGCAGTACCTCTCTTGTTTCACTTAATTTTGCATGCCTCAAAGGAGATATTGATTTAGAAGCCCTGGAGAGT CTTGTAGCGAGATCGCCCAACCTGAGGAGCTTGAGGCTAAGTCGCGCCGTGCCATTTGATGTGCTTCAGAGGATATTGATCCTTGCTCCCCAGTTGGTGG ATTTGGGTGTAGGTTCTTATCTTCATGATCCAGAGTCTGAGAATTATGATAAATTTGCGGCTGCCATTCAGAAGTGCATGTCTGTTAGGAGTCTTTCTGG GATATTGGATGTTGCTACCCATTCCCTTGCAGCTTTTCATGTGATCTGTCCAAACTTAACCACATTGAACTTGAGTTATGCCCCAGGAATTCATGGTAGT GAGCTTATGAAGCTAATTCGTCACTGTGGGAAACTTCAGCGACTATGGATACTTGATTGCATTGGTGATGAAGGACTCGAAGTCGTAGCTTCCACTTGTA AAGATCTGGAGGAGTTGAGGGTCTTCCCTTCTGATCCCTTTGTTGGACAAGCGACTGTAACCGAAGAAGGCCTTGTCTCTATCTCAAGAGGTTGCCCGAA GCTTAATTCAATACTCTACTTCTGTCAACAGATGACAAATGCTGCTCTGATTACAGTTGCAAAGAATTGTCCAAATTTCATAAGGTTCAGGCTGTGCATT CTGGATCCTACAAAACCAGATGCTGCTACCCAGCAACCACTGGATGAAGGTTTTGGGGCGATAGTTCGAGCATGCAAGGATTTGAAGCGCTTGTCACTTT CCGGTCTTCTGACCGACCGAGTTTTCCAGTACATTGGGATGTATGCCGAGCAGCTGGAGATGCTGTCGATAGCATGTGCAGGGGACGCCTGTGATGTCAC ACTAGGAGGCTGCAAAACTCTAGCGAAGAAAATGCCGGGCTTGAACGTGGAGATCATGAATGAGAATGATCAGATGGAGTTTGCAGATGATGATCGGCAG AAGGTAGACAAGATGTACCTGTATCGAACACTGGCCGGACAAAGGAGAGATGCACCGGGATCCGTCCGGACTCTGTAA
AA sequence Show only first row Show all	>Lus10035161 pacid=23162586 polypeptide=Lus10035161 locus=Lus10035161.g ID=Lus10035161.BGIv1.0 annot-version=v1.0 MNHFPDEVLEHIFKFVATHQDRNSVSQVCKLWHRIESYSRQKVFIGNCYAISPERVVGRFPGLKSITLKGKPHFADFNLVPPDWGGFVYPWIEAFARNRV GLEELRLKRMVVSDESLKLLSTSFPNFKSLVLVSCEGFTTDGLVAVAANCRHLKELDLQENDVEDHRGHWLSCFPDSSTSLVSLNFACLKGDIDLEALES LVARSPNLRSLRLSRAVPFDVLQRILILAPQLVDLGVGSYLHDPESENYDKFAAAIQKCMSVRSLSGILDVATHSLAAFHVICPNLTTLNLSYAPGIHGS ELMKLIRHCGKLQRLWILDCIGDEGLEVVASTCKDLEELRVFPSDPFVGQATVTEEGLVSISRGCPKLNSILYFCQQMTNAALITVAKNCPNFIRFRLCI LDPTKPDAATQQPLDEGFGAIVRACKDLKRLSLSGLLTDRVFQYIGMYAEQLEMLSIACAGDACDVTLGGCKTLAKKMPGLNVEIMNENDQMEFADDDRQ KVDKMYLYRTLAGQRRDAPGSVRTL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10035161 [exp]	0	1
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Lus10027259 [exp]	3.0	0.8818
AT1G60140		ATTPS10	TREHALOSE PHOSPHATE SYNTHASE 1...		Lus10030635 [exp]	8.2	0.8485
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Lus10011530 [exp]	13.0	0.7951
AT4G24800		ECIP1	EIN2 C-terminus Interacting Pr...		Lus10018085 [exp]	15.5	0.8419
AT1G60140		ATTPS10	TREHALOSE PHOSPHATE SYNTHASE 1...		Lus10030853 [exp]	17.9	0.8438
AT5G43830			Aluminium induced protein with...		Lus10039382 [exp]	20.0	0.7802
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10025584 [exp]	21.4	0.7817
AT5G66180			S-adenosyl-L-methionine-depend...		Lus10028444 [exp]	21.8	0.7901
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Lus10019074 [exp]	22.6	0.8377
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10040557 [exp]	24.4	0.8263

Compare expression of checked genes

Lus10035161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.