Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08660 720 / 0 MGP2 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) AT3G48820 369 / 5e-124 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) AT1G08280 50 / 3e-06 Glycosyltransferase family 29 (sialyltransferase) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031992 [exp] 913 / 0 AT1G08660 743 / 0.0 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) Lus10043193 [exp] 371 / 1e-124 AT3G48820 697 / 0.0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) Lus10032547 [exp] 362 / 3e-121 AT3G48820 692 / 0.0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) Lus10043382 [exp] 52 / 2e-07 AT1G08280 186 / 7e-57 Glycosyltransferase family 29 (sialyltransferase) family protein (.1) Lus10019538 [exp] 52 / 6e-07 AT1G08280 454 / 2e-159 Glycosyltransferase family 29 (sialyltransferase) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G145400 [exp] 733 / 0 AT1G08660 776 / 0.0 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) Potri.015G104100 [exp] 367 / 2e-123 AT3G48820 730 / 0.0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) Potri.009G144000 [exp] 58 / 6e-09 AT1G08280 416 / 9e-145 Glycosyltransferase family 29 (sialyltransferase) family protein (.1) Potri.004G184200 [exp] 55 / 6e-08 AT1G08280 467 / 1e-164 Glycosyltransferase family 29 (sialyltransferase) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00777 [flax] [poplar] Glyco_transf_29 Glycosyltransferase family 29 (sialyltransferase)
Representative CDS sequence Show only first row Show all	>Lus10035162 pacid=23162361 polypeptide=Lus10035162 locus=Lus10035162.g ID=Lus10035162.BGIv1.0 annot-version=v1.0 ATGAGACCACAAAAGAATGCTAGCAGTAGACTGCCGTCGGTCTTCCATCTAGTTTGGGTCGCGGCTTTCTTTTCTCTTTTCATCTTCATTATCTTCCAAT CTACTTTCTTCTCAGGGAATAAGAGAACAGATCAGAAAACGGAAGAGGACATTCGAACACTTTCTCAATTTCAATCCGAGGTTCAGCAATGCGTGGCAAA CAGGGGCCTTGGTCTTACTGCTTTAATCACCGACCATTGCAAATTGACTCTTAAGTTCCCAGAAGACACCAACAGCACATGGTTCAATGCGCAGTTCAAA GTCTTTGAAGCGTTGGAGTTCCCTTACGATGTTTGTGATACACTTATGTTGTGGGAGCAGTATCGGAACATGACTACTGTGCTGACACGAGAATATCTTG ACGCTCGGCCTGATGGATGGTTTGATTATGCAGCAAAAAGAATAGCTCAATTGGGAGCTGATAAATGCTACAACCGTAGCCTTTGTGAGGAACATCTCAA TTTAATTTTACCAGCAAAGCCCCCGTTCTACCCTCGGCAGTTTCGCACTTGTGCTGTTGTTGGTAATTCTGGAGACCTCTTAAAGACAGAGTTTGGTGAA GAGATTGATGGTCATGATGCTGTTATTCGAGATAATGAAGCTCCTGTTAACCAGAAATATGCGAAGCATGTTGGATTGAAGAGGGATTTCCGCCTTGTAG TTCGTGGTGCTGCTGCAAACATGGTCAAAATCCTAGAGGGATCAGATGAAGAGGTGCTCATCATTAAAAGTGTGGTCCATAGAGACTTTAACGCGTTGAT AAAGACAATTCCGAACCCTGTTTATCTCTTCCAAGGGATTGTGCTGCGAAGGGGTGCTAAAGGAACTGGAATGAAATCCATAGAACTTGCACTTTCCATG TGTGAAACTGTTGATATATATGGTTTCACTGTTGATCCTGGCTATACTGAATGGACGAGATACTTCTCTACACCTCGTAAAGGGCATAATCCACTTCAAG GGCGAGCATATTACCAACTGCTAGAGTGTCTTGGTGTTATTAGAATCCACTCCCCCATGAGAGCTCAGAGGAAACAAGACTGGGCTGATGTACCAAGCCA AGAAACAGTGTCCAGAGCTCATGCAGCTGCCATGCGATTGAAGTTCAGGGAGGCTGCAGGGTTGGGGCAGTTTGGAAAATGTAAGGTGTGGGGTCATAGA GATGCTAACGGAAATGGGCCAATCTCAGGATCACCGGACATGACTGATGTTAGGAAAAACTCAAACTACAGTAAGTGGGAGACGTTGCCCTTTGAAAGTC TTAGAAGAGAGGCACAGGATCATTACGCCCAGATGGAAGGTGTGTCTTTGTACAAGATGGATGGCAACAAGCTGGACGATTTGCTCCATGGTGCCATTCT CACTACTCATTCGGAATCTAATATTGAACGACTGATTGATTTGTGTCCAATGTTCAGGAAGGCGTAA
AA sequence Show only first row Show all	>Lus10035162 pacid=23162361 polypeptide=Lus10035162 locus=Lus10035162.g ID=Lus10035162.BGIv1.0 annot-version=v1.0 MRPQKNASSRLPSVFHLVWVAAFFSLFIFIIFQSTFFSGNKRTDQKTEEDIRTLSQFQSEVQQCVANRGLGLTALITDHCKLTLKFPEDTNSTWFNAQFK VFEALEFPYDVCDTLMLWEQYRNMTTVLTREYLDARPDGWFDYAAKRIAQLGADKCYNRSLCEEHLNLILPAKPPFYPRQFRTCAVVGNSGDLLKTEFGE EIDGHDAVIRDNEAPVNQKYAKHVGLKRDFRLVVRGAAANMVKILEGSDEEVLIIKSVVHRDFNALIKTIPNPVYLFQGIVLRRGAKGTGMKSIELALSM CETVDIYGFTVDPGYTEWTRYFSTPRKGHNPLQGRAYYQLLECLGVIRIHSPMRAQRKQDWADVPSQETVSRAHAAAMRLKFREAAGLGQFGKCKVWGHR DANGNGPISGSPDMTDVRKNSNYSKWETLPFESLRREAQDHYAQMEGVSLYKMDGNKLDDLLHGAILTTHSESNIERLIDLCPMFRKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10035162 [exp]	0	1
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10007201 [exp]	2.4	0.8164
AT5G65630		GTE7	global transcription factor gr...		Lus10020470 [exp]	2.4	0.8543
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10041363 [exp]	2.8	0.8618
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10031992 [exp]	4.4	0.7779
AT5G42660			Protein of unknown function (D...		Lus10016294 [exp]	5.7	0.8021
AT1G04910			O-fucosyltransferase family pr...		Lus10032603 [exp]	6.2	0.8378
AT4G33945			ARM repeat superfamily protein...		Lus10012060 [exp]	8.1	0.7603
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10042767 [exp]	10.6	0.8207
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10001013 [exp]	13.7	0.8138
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10014759 [exp]	14.4	0.7113

Compare expression of checked genes

Lus10035162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.