Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26730 604 / 0 RING/U-box superfamily protein (.1) AT4G03510 50 / 2e-06 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT3G58030 49 / 8e-06 RING/U-box superfamily protein (.1.2.3.4) AT4G27470 47 / 3e-05 ATRMA3 RING membrane-anchor 3 (.1) AT2G42030 47 / 4e-05 RING/U-box superfamily protein (.1) AT1G19310 45 / 7e-05 RING/U-box superfamily protein (.1) AT1G74990 44 / 7e-05 RING/U-box superfamily protein (.1) AT2G23780 45 / 9e-05 RING/U-box superfamily protein (.1) AT4G28270 44 / 0.0001 ATRMA2 RING membrane-anchor 2 (.1) AT5G05130 45 / 0.0003 DNA/RNA helicase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031993 [exp] 1356 / 0 AT3G26730 612 / 0.0 RING/U-box superfamily protein (.1) Lus10039001 [exp] 49 / 1e-05 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10033697 [exp] 47 / 1e-05 AT4G03510 149 / 1e-44 RING membrane-anchor 1 (.1.2) Lus10039821 [exp] 47 / 1e-05 AT4G03510 154 / 2e-46 RING membrane-anchor 1 (.1.2) Lus10016796 [exp] 47 / 2e-05 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1) Lus10022492 [exp] 47 / 2e-05 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1) Lus10021063 [exp] 48 / 3e-05 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10022324 [exp] 47 / 3e-05 AT3G27330 251 / 4e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10029292 [exp] 47 / 4e-05 AT3G58030 374 / 6e-127 RING/U-box superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G145300 [exp] 739 / 0 AT3G26730 623 / 0.0 RING/U-box superfamily protein (.1) Potri.004G042700 [exp] 50 / 1e-06 AT4G03510 157 / 1e-47 RING membrane-anchor 1 (.1.2) Potri.011G051800 [exp] 50 / 1e-06 AT4G27470 163 / 8e-50 RING membrane-anchor 3 (.1) Potri.006G193600 [exp] 50 / 5e-06 AT3G58030 389 / 2e-132 RING/U-box superfamily protein (.1.2.3.4) Potri.016G058300 [exp] 50 / 6e-06 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.014G055800 [exp] 48 / 2e-05 AT2G44950 917 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Potri.006G035700 [exp] 48 / 3e-05 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.002G141300 [exp] 47 / 4e-05 AT2G44950 877 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Potri.001G229600 [exp] 47 / 4e-05 AT2G44410 191 / 6e-56 RING/U-box superfamily protein (.1) Potri.002G133000 [exp] 45 / 5e-05 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035163 pacid=23162440 polypeptide=Lus10035163 locus=Lus10035163.g ID=Lus10035163.BGIv1.0 annot-version=v1.0 ATGTCCATCTTGCCCATACAGACTCAAGGTTCTGACTCGTCTTCTTCTTTGAGTTCTCCCGCTCTAACCTCCGATCCTGATTATGGCACTCAACTTTCTC CCTCATCTCCTCCTCCCTCCCGCCAATTTCGATCCATGCCTCTCTCAGACTCCCACTCTCCAGTATCCCCCATCTCAGGACCATTGGGTTTGGATGGAGA AGCGTTTGTCAATGGATCTTCCGAAGAGGTGACTGAACCGGTGACACCAATCGGCGATGCAAATTCAGTCCATCTCAATGGACAGACTCGTGGTCTATCT AATTCTGGAGCCGGTAATCCAGTCCATCTCAATGGACAGACTCGCGGTCCATCTAATTCTGGAGCCGGTCGATCTGAAGGGAGAACATCAGAGAATGCTG CTCTTCTTCCAAGTGAAAGAAATAATATTTCAACCAATTCTCAAGGTGGCAGTTCACATTCTTCTGGAAAGAGGACCCAGATGATGAATGCTAATCATCT CCTCAATTTCCATTATGATCCCATAGCGCGATCTCAGCCCAGTCCTGCTCCAAGGCGACATCAGAAAATTAAGCCATACAATAAGGATTTGTTCCTTCAG GCTAATTTCAAGTTTGTTGTGCTGGATACTGGGGACATTGCTCACTCTTTGGATCCAGATAAAATGCTTAGCTGGGAAGATATTATCTGTGTTAGGTACT CCACATCAGTTCCACTGCAGTGTCCAATATGCTTGGAGCAGCCCTTGTGTCCCCAGATAACTTCCTGTGGGCATATCTTTTGCTTTCCTTGTATTGTCCG GTATTTGTTAATGGGCCAAGAGGATTTCAAAGGGGATTGCTACAAGCGCTGCCCCTTATGTTTTATGATGGTGTCTCACAAGGATTTGTACACTGTTTCT GTTGAGAATGTTAAGCAGTACAGAGTTGGTGAGACTATAGATTTCATGCTACTAACTAGGCAGAAGGATTCATTTACTCCATCAGAGAGGAATAAGCAGG AATCAGATTTAGCATTGAGATGCAATGAAGATGTTACTGATCCATATGCAAAATTTATATTTACGTCAGATGTAGAACTTTCAGTTAGAAAAGCAGTTGC AGAGTTGGATAGTTGGTTAGCAAGAGCTGATTCAGGACTCGTGGATGATTTGGAAAAGCTCCCATATGTTTGTGCTGCAATGGAGCAGTTGGAGAAGAGG AGAAAGTATTGGAATGAGTCGCGGGCATGTGACACCAATATATTGCATAAGCCAGCGTGTAATCAGAAAGGCTCTGTTACTGGCACCAGGAAGTCATCAC CTCCTGTTGATGTCAATGGCCAGGCTAAGTTGTTGGATAACATAAAGCTTGATTCCGATGAGTCACTTGACGAGAACGACGTGGTTCAATCATCCTCTCA TGGTGATAGGAAGAGCTTACAACAACCACTTAATGGCTCTAAAGATAACAAGGACTCATACAATTTCTACCAGGCAGTTGATGGTCAACATTTCATACTT CATCCATTCAACATGAAGTGCCTTCTTCAGCATTATGGAAGCTACGGGATGCTTCCTGACAGAATAAAAGGGAAAATCCTTCAGCTGGAGCCTATGACTC AGACAGAGGCTATGAGGAGACGTTATCGTTACTTGAGTCATTTTTCTTTGACGACAACAGTCCAGCTATGTGAAATCGATATGAGTGAGATACTTCCGCC TGATGGCCTATCTCCATTTAGGGATGAAATAAGAAAACATGAGCGTCTGAGGAAGCAACAAGCTGATAAGGAACGGAAGGATAAAAGCAAGAGTGAAGCT GCTGGTGCATATGATATATCTCTTGTACCAAAATTCGAGCCGGCATTTGATCATGCCCCTGTGTTCTCCATGGATGATTTTGAAGCATTGGGGAATGCCA GTCCAATGTCATCAAGCCCGCCTATTGTCAAGGATCGGATGTTGTTCTCCAACGTCACCCGGCTTGGTTACGCCGCTGGATCTAGTTCTCCAGCCTTGCG AATCGATCAGCCCAAGGCGGTTCAGGAGGGAAATTCCGGTGCAGGAAACGGCGCGAGAAACCCAGGAACGCCATCGTTTGCGAATGTAATATCGAGGGAG AGGAACACTGAGGCTCCCAAGAGCAACGAGCCAGCAGGAAAGAAAGGGAAGAAGGCGAGCAGGGTTCTTTTGTCGACAGCTGGTGGACGACGTTACTAG
AA sequence Show only first row Show all	>Lus10035163 pacid=23162440 polypeptide=Lus10035163 locus=Lus10035163.g ID=Lus10035163.BGIv1.0 annot-version=v1.0 MSILPIQTQGSDSSSSLSSPALTSDPDYGTQLSPSSPPPSRQFRSMPLSDSHSPVSPISGPLGLDGEAFVNGSSEEVTEPVTPIGDANSVHLNGQTRGLS NSGAGNPVHLNGQTRGPSNSGAGRSEGRTSENAALLPSERNNISTNSQGGSSHSSGKRTQMMNANHLLNFHYDPIARSQPSPAPRRHQKIKPYNKDLFLQ ANFKFVVLDTGDIAHSLDPDKMLSWEDIICVRYSTSVPLQCPICLEQPLCPQITSCGHIFCFPCIVRYLLMGQEDFKGDCYKRCPLCFMMVSHKDLYTVS VENVKQYRVGETIDFMLLTRQKDSFTPSERNKQESDLALRCNEDVTDPYAKFIFTSDVELSVRKAVAELDSWLARADSGLVDDLEKLPYVCAAMEQLEKR RKYWNESRACDTNILHKPACNQKGSVTGTRKSSPPVDVNGQAKLLDNIKLDSDESLDENDVVQSSSHGDRKSLQQPLNGSKDNKDSYNFYQAVDGQHFIL HPFNMKCLLQHYGSYGMLPDRIKGKILQLEPMTQTEAMRRRYRYLSHFSLTTTVQLCEIDMSEILPPDGLSPFRDEIRKHERLRKQQADKERKDKSKSEA AGAYDISLVPKFEPAFDHAPVFSMDDFEALGNASPMSSSPPIVKDRMLFSNVTRLGYAAGSSSPALRIDQPKAVQEGNSGAGNGARNPGTPSFANVISRE RNTEAPKSNEPAGKKGKKASRVLLSTAGGRRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26730			RING/U-box superfamily protein...		Lus10035163 [exp]	0	1
AT3G26730			RING/U-box superfamily protein...		Lus10031993 [exp]	1.0	0.8663
AT5G63380			AMP-dependent synthetase and l...		Lus10036994 [exp]	4.9	0.8472
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10001377 [exp]	7.7	0.8144
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	9.2	0.8425
					Lus10002136 [exp]	9.2	0.8206
AT3G14205			Phosphoinositide phosphatase f...		Lus10037446 [exp]	9.6	0.8451
AT1G78420			RING/U-box superfamily protein...		Lus10013709 [exp]	17.3	0.7907
AT2G25760			Protein kinase family protein ...		Lus10014152 [exp]	17.7	0.7570
AT3G14205			Phosphoinositide phosphatase f...		Lus10013184 [exp]	18.2	0.8382
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	19.6	0.8149

Compare expression of checked genes

Lus10035163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.