Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02010 939 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 535 / 5e-178 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 530 / 2e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 525 / 1e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 513 / 5e-169 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G13650 501 / 9e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 498 / 3e-162 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 493 / 7e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 483 / 5e-160 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G33990 485 / 2e-159 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031994 [exp] 1655 / 0 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 517 / 6e-171 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013578 [exp] 520 / 6e-170 AT1G16480 1036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013991 [exp] 515 / 2e-169 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 514 / 4e-169 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 504 / 2e-166 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 507 / 3e-165 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030908 [exp] 503 / 1e-161 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10022890 [exp] 487 / 9e-161 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G237100 [exp] 1081 / 0 AT3G02010 967 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 573 / 0 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 557 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 546 / 0 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 538 / 2e-180 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G047800 [exp] 530 / 3e-175 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 518 / 3e-173 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.015G018700 [exp] 519 / 5e-172 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 520 / 5e-170 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 507 / 2e-167 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10035164 pacid=23162529 polypeptide=Lus10035164 locus=Lus10035164.g ID=Lus10035164.BGIv1.0 annot-version=v1.0 ATGCTCCCATGGCTGCCGTGCAGAGCGACCCCGCTCAGAAAGCTTGCATCTTTAGCAACCTCCCAATTCCCCAGGAGCCACCACCGACCACCCGATGCTC GACTCGTCAAAACGGGATTTGATCCAAGCATTTCCCGCTTCAATTTCCTGGTCAAGGAGCTGCTCAACAGAGGTGACCTCACACAAGCCCGCCAAGTGTT CGATCAAATGCCTCAAACCAATACTGTCACCACCAACTTGTTGATTTCCGGGTACGTGAAATCTGGCAATTTGTCCGTAGCCAGACAGCTGTTTGATGAC ATGGTGGAACAACGCACTGCTGTGTCTTGGACCATTCTGATTGGTGGCTACTCGCTGATTGGTCGATCTGCAGAGGCCTTCCAGCTTTTCGTCGAAATGT GTAGGTTCGGGACTGAGCCTGATCATGTTACTTTCGCGACTCTGTTATCCGGGTTCAATAATGGTGATGGAATGGTTAGTCGTGAACTGGATCAGCTTCA CTGCCTCGTTGTTAAACTGGGACATAAGTCTACTGCTATGGTTTGCAATTCTTTGATCGACGTGTACTGCAAGACCGGCCGGATCGAGAATGCTCTCAAA CTGTTCGAGGAAATGCCTCAAAGGGATACTGTCAGCTTCAATGCATTGATGACTGGGTACGTAAGAAACGGACGGAACCAAGAGGTAGTAGAGCTTTTTG CAGAAATGCAAAACTCGGAGATTGCACTTTCGGATTTCACATTCGCAGCAGTTATCGGTGCATGTGTTGGCTTAGATAACCTCGCATTTGGTCAGCAAGT TCACGGCTTGACAGTGAAGAGCAGTTTCGTTCTCGACATGTTCGTAGGCAATGCGTTACTAGATTTTTATTCGAAACACGGATGCGTTTACGAAGCTTCG AAACTATTCCGTGAGATGCCTGAACTGGACTGTGTATCTTATAACGTGCTGGTTACAGCTTTTGCATGGGTCGGGCAATTCCGCGAGTCTATTGAACTCT TCAGGGAGCTCCAGCATACGAAATTCGAATGCAGGAAGTTCCCATTCTCAACCATGTTGAGTATAGCTGCTAATAAACTGGACTTGCAAATGGGTCAGCA ACTCCATTCTCTTACTATCGCAACAGAGGCTGTTTCGGATGTCCTAGTGGCTAATGCATTGGTCGATATGTATGCCAAGTGCGACAAGTTCAAGGAAGCT CGAAGAATATTCGGGAAACTCAGTGATAGAAGCACGGTTCCATGGACGGCCATGTTATCAGCGAATATCCAGAAGGGACTTTACGAGGAAGGTCTGCAGC TTTTCAAGGAGATGCTTAAGGAGGGCATAAGTCCTGACCAGGCCACTTTTGCTAGTGTCCTGAAGGCCTCTGCAAGTTTGGCTTCCATCTCACTTGGGAA GCAGCTACACTGTTGTGCCATAAGAACTGGGTTTCTAGCAAATGTTTACTGTGGTAGTGCGCTTGTAGATATGTACGCCAAATGCGGATCTATGAAAGAT GCAGTGCAAAGTTTCGAAGAGATGCCCGAGAAAAATGTGGTATCCTGGAACGCAGTAATCTCTGCTTATGCACATGACGGTGATGGAGCAGCCACTCTCC AATCGTTCGAAAATATGGTTTCCTCGGGGTACGTGCCGGATTCGGTGAGTTTCTTGAGCGTTCTGGCTGCTTGTAGCCATTCTGGATTGGTTGAAGAAGG GTTCCAGTACTTCAGCACCATGACTGAAGTGTATAAACTAGTTCCCAAGAGAGAGCACTATGCCTCAATGATTGATTTGTTATGCAGGCGTGGGAAATTC AAGGAAGCAGAGACGTTGATGGGCGAAATGCCTTTCGAGCCTGACGAGATCTTGTGGTCATCTGTTTTGAACTCGTGCAGGATTCATAAGAACCACCAGT TAGCTAGCAAAGCAGCACAGCAGCTGTTTAGTATGGAAACCCTTAAAGATGGAGCGCCTTACATCACCATGTCTAACATACTTGCAGCGGCAGGACGGTG GGACGATGTAGCGAATGTGAAGAAGGCGATGAGGGAACGAGGAGTTAGAAAGGTTCCGGCTTATAGTTGGGTCGAAATCAATCACAAGGTCCATGTGTTC TCCTCCAATGACAAGAGCCATCCGCAAACGAGAGAGATCATTCGAAAGCTCGACGAGTTGGTAGAGAAAATGGAGGAAGAAGGTTATGCACCAGATACAA GTTGTGCTCTCCAGAACGTGGAACAGAACATCAAAGTTGAGTCCCTTAAGTACCATAGTGAACGCCTGGCAATAGCATTTGCTTTGCTCCACTCGCCAGA AGGATGGCCTATCTTGATCATGAAGAACCTGCGAGCTTGTGCAGACTGCCATGCTGCAATCAAGGTAATCTCAAAGATTGTTGGACGGGAAATTACAGTT CGAGATTCGAGCAGGTTCCATCGTTTCAAAGATGGGATTTGCTCCTGTGGTGATTACTGGTAA
AA sequence Show only first row Show all	>Lus10035164 pacid=23162529 polypeptide=Lus10035164 locus=Lus10035164.g ID=Lus10035164.BGIv1.0 annot-version=v1.0 MLPWLPCRATPLRKLASLATSQFPRSHHRPPDARLVKTGFDPSISRFNFLVKELLNRGDLTQARQVFDQMPQTNTVTTNLLISGYVKSGNLSVARQLFDD MVEQRTAVSWTILIGGYSLIGRSAEAFQLFVEMCRFGTEPDHVTFATLLSGFNNGDGMVSRELDQLHCLVVKLGHKSTAMVCNSLIDVYCKTGRIENALK LFEEMPQRDTVSFNALMTGYVRNGRNQEVVELFAEMQNSEIALSDFTFAAVIGACVGLDNLAFGQQVHGLTVKSSFVLDMFVGNALLDFYSKHGCVYEAS KLFREMPELDCVSYNVLVTAFAWVGQFRESIELFRELQHTKFECRKFPFSTMLSIAANKLDLQMGQQLHSLTIATEAVSDVLVANALVDMYAKCDKFKEA RRIFGKLSDRSTVPWTAMLSANIQKGLYEEGLQLFKEMLKEGISPDQATFASVLKASASLASISLGKQLHCCAIRTGFLANVYCGSALVDMYAKCGSMKD AVQSFEEMPEKNVVSWNAVISAYAHDGDGAATLQSFENMVSSGYVPDSVSFLSVLAACSHSGLVEEGFQYFSTMTEVYKLVPKREHYASMIDLLCRRGKF KEAETLMGEMPFEPDEILWSSVLNSCRIHKNHQLASKAAQQLFSMETLKDGAPYITMSNILAAAGRWDDVANVKKAMRERGVRKVPAYSWVEINHKVHVF SSNDKSHPQTREIIRKLDELVEKMEEEGYAPDTSCALQNVEQNIKVESLKYHSERLAIAFALLHSPEGWPILIMKNLRACADCHAAIKVISKIVGREITV RDSSRFHRFKDGICSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	0	1
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	1.0	0.9251
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10017032 [exp]	1.4	0.9166
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10030415 [exp]	3.0	0.8971
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10031994 [exp]	4.0	0.8669
AT1G79220			Mitochondrial transcription te...		Lus10031762 [exp]	4.9	0.8823
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10024376 [exp]	5.5	0.8273
AT2G45030			Translation elongation factor ...		Lus10039840 [exp]	7.7	0.8601
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10020081 [exp]	8.2	0.8398
AT1G79220			Mitochondrial transcription te...		Lus10031184 [exp]	8.9	0.8785
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10017386 [exp]	9.6	0.8265

Compare expression of checked genes

Lus10035164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.