Plant FIBer expression Database

Lus10035165 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G31410 167 / 2e-52 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031995
[exp]
276 / 2e-95 AT2G31410 194 / 3e-63 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G237000
[exp]
196 / 3e-64 AT2G31410 200 / 2e-65 unknown protein
Potri.014G145600
[exp]
196 / 5e-64 AT2G31410 169 / 3e-53 unknown protein
PFAM info
Representative CDS sequence
>Lus10035165 pacid=23162560 polypeptide=Lus10035165 locus=Lus10035165.g ID=Lus10035165.BGIv1.0 annot-version=v1.0
ATGGCCTGCACCATTGATTTCCGTAACCTAGACGAAGGCTTCGGCGGCAAGACCGCCAAGCGAAAGCGCGAGGTCGAAGCCATCGCCGCCGCTGGTGGCG
GAAAGGACGATTCCATGGAGGTCGATACGATTCCTCCGCCGGCGAAGCGTTCTGCGGTCTCTTCCGCGGAGAATCCCGACAAGCCGGTGTTCGGGAACCC
CACTTACGACGGAGTTATAGCCGGAAGGGTTTCTGGACGGAAGTGGAAGCAGGTCAGGTCTCGTCGTTCGTCTGCCAAGCTGGTGAGCAGGGTAGGGACA
CCGTTCGAGGAAAGGAAGAAGGAGAAGGAGATCAAGAAGGCTTACAGAGAGAGGGTGAACGAGCTGAAGGGAGAGATAAGGACGAACAAACAGGAGAAGA
GGAAGGCTAGGGAAGAGAGGGAGAAGAAGAAGAAGGAGAATATATTGAAGTCTGGTACTAAGCTGCAGAAGATCTCCAATCCCAAGACTCTGAAGAAGAT
CGCCAAGTCTAAAGATCGGAAATCGCTCAAGATCGTTCCTGATGATGTATTCAATAAGAACAAGAACAGCAGCAGCAAGAAGTAG
AA sequence
>Lus10035165 pacid=23162560 polypeptide=Lus10035165 locus=Lus10035165.g ID=Lus10035165.BGIv1.0 annot-version=v1.0
MACTIDFRNLDEGFGGKTAKRKREVEAIAAAGGGKDDSMEVDTIPPPAKRSAVSSAENPDKPVFGNPTYDGVIAGRVSGRKWKQVRSRRSSAKLVSRVGT
PFEERKKEKEIKKAYRERVNELKGEIRTNKQEKRKAREEREKKKKENILKSGTKLQKISNPKTLKKIAKSKDRKSLKIVPDDVFNKNKNSSSKK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G31410 unknown protein Lus10035165
[exp]
0 1
AT2G29960 CYP19-4, ATCYP5... CYCLOPHILIN 19-4, ARABIDOPSIS ... Lus10018238
[exp]
4.6 0.8639
AT1G36310 S-adenosyl-L-methionine-depend... Lus10023545
[exp]
5.2 0.8694
AT5G18610 Protein kinase superfamily pro... Lus10012814
[exp]
6.0 0.8617
AT3G57090 FIS1A, BIGYIN FISSION 1A, Tetratricopeptide ... Lus10009706
[exp]
8.4 0.8465
AT3G07680 emp24/gp25L/p24 family/GOLD fa... Lus10022525
[exp]
10.4 0.8478
AT4G21580 oxidoreductase, zinc-binding d... Lus10018450
[exp]
12.6 0.8173
AT3G01170 Ribosomal protein L34e superfa... Lus10030686
[exp]
13.0 0.8573
AT5G63030 GRXC1 glutaredoxin C1, Thioredoxin s... Lus10001237
[exp]
13.2 0.8681
AT3G62790 NADH-ubiquinone oxidoreductase... Lus10021691
[exp]
14.6 0.8055
AT3G10870 ATMES17, MES17 ARABIDOPSIS THALIANA METHYL ES... Lus10029011
[exp]
14.7 0.8174

Lus10035165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.