Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14020 497 / 6e-176 Endosomal targeting BRO1-like domain-containing protein (.1) AT1G73390 336 / 1e-112 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) AT1G17940 313 / 8e-104 Endosomal targeting BRO1-like domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031997 [exp] 809 / 0 AT5G14020 504 / 9e-179 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10012563 [exp] 677 / 0 AT5G14020 486 / 9e-172 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10041527 [exp] 675 / 0 AT5G14020 483 / 6e-171 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10031881 [exp] 348 / 3e-117 AT1G73390 704 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10042289 [exp] 341 / 3e-114 AT1G73390 686 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10031313 [exp] 337 / 6e-113 AT1G73390 690 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10026368 [exp] 287 / 4e-93 AT1G73390 613 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G062000 [exp] 635 / 0 AT5G14020 524 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Potri.001G323600 [exp] 618 / 0 AT5G14020 521 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Potri.004G067400 [exp] 336 / 2e-112 AT1G73390 647 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Potri.017G154200 [exp] 310 / 7e-103 AT1G73390 563 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03097 [flax] [poplar] BRO1 BRO1-like domain
Representative CDS sequence Show only first row Show all	>Lus10035167 pacid=23162532 polypeptide=Lus10035167 locus=Lus10035167.g ID=Lus10035167.BGIv1.0 annot-version=v1.0 ATGGGGTGCACTACTTCTGTATATGCAATTGGAAAGAAGAAGAACAAGCCAATTATACCAGAAGCTGTAATACATGTTCCTTCAATCAGAATTCCAGCTC AGACTGATCTCCATAGAGCTCTTAAAGGGTTGGTTCCTCGAGATCTTCTTGATCGATTAGCCGGTCTTCGGAGCCAGATTGTGTTGATTGCTGAGGATAC AGGTGGATCTGCTATAGCAGAGTTGAAGAGAACATTAGAGGAGTACATGTCTGTGCTACTTGGACTAACTAAGAAAGAACATGGACTTGAGGACTTGGTT GAGTTCACGTGGAAAAACCTGGAAAATGGTAAACAGGAAACAGGATTAGCAAACTGCTGGTTTGAAGTAGTATCAGTGGTTCATTTGATGGCAATGCTGA CATTATCCGAGGCTAACTCATTAATGATTCCAAAGGCTTATTCTGGTTCAAGCATAAGAGTTGTGTCTTCAGAATGTAAGAGGGAAGCTATTGATTTGCT GCTAAAGGCATCAGGCTACTTGGAGTTCTGCATCCATGAAGTATTAACTCATATTCCACCAGAAATCAAGAAAAAATTTCCAAACGACTTGCAAGATGGT GTGTTGGATGCCATATCAATTCAAGCACTAGGACAGGGGACAGAAATCCAACTTGGTTTAGCTATTGAAAGCCAGAATGCTAGTTTACCGGTTAAAAGGA GGCTGGCATGTGAACAGCTGATCTACTTCAGTCAGGCTTATCAAAGCTTGTTAGGAGCTGACATGAGTAATGGGTATGGAAAGAAGCATCTGAGCTTCAT CAAGTGGAAGTTCCTTGAATCAAAGGCTGCAGCATATTACTACCATGGACTCGTCGTTGACAAAGGGAGTGAACCATCCTGCCATGTGCGTGCAGTTTGC TGTTTCCTTTCTGCACAAGGACTTCTGACAGAGAGCAAGAGAGCCCGCTTAAGCTTTTGCCTTTCACCTCCCATTACCAGATCTTCTCCGCAATGGGGAG TCATGAAGCATTTACATAAAAAAATTCCAGAAGTTGCTTGCAGGAAGTCTGAAATGTATGGCTACCTGTTGGAGGAAGAAAAAGCTTTACAAGTATTGCC TGAGCTACCAGATTTTCAACTGTCTTTAAGCCCAGATGACTTTGCACTACCTGAGCCGGATTCAGCTTGGGACAGTAAGAGCTGGGAAATTCAGAAGCAG CCCTTAAAAGATCACCTCCAAGACAGTGAAGGAGAAGATAACTGA
AA sequence Show only first row Show all	>Lus10035167 pacid=23162532 polypeptide=Lus10035167 locus=Lus10035167.g ID=Lus10035167.BGIv1.0 annot-version=v1.0 MGCTTSVYAIGKKKNKPIIPEAVIHVPSIRIPAQTDLHRALKGLVPRDLLDRLAGLRSQIVLIAEDTGGSAIAELKRTLEEYMSVLLGLTKKEHGLEDLV EFTWKNLENGKQETGLANCWFEVVSVVHLMAMLTLSEANSLMIPKAYSGSSIRVVSSECKREAIDLLLKASGYLEFCIHEVLTHIPPEIKKKFPNDLQDG VLDAISIQALGQGTEIQLGLAIESQNASLPVKRRLACEQLIYFSQAYQSLLGADMSNGYGKKHLSFIKWKFLESKAAAYYYHGLVVDKGSEPSCHVRAVC CFLSAQGLLTESKRARLSFCLSPPITRSSPQWGVMKHLHKKIPEVACRKSEMYGYLLEEEKALQVLPELPDFQLSLSPDDFALPEPDSAWDSKSWEIQKQ PLKDHLQDSEGEDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14020			Endosomal targeting BRO1-like ...		Lus10035167 [exp]	0	1
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008611 [exp]	1.4	0.9369
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10026917 [exp]	2.8	0.9100
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10002893 [exp]	3.9	0.9281
AT2G02061			Nucleotide-diphospho-sugar tra...		Lus10031330 [exp]	4.5	0.9289
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10012557 [exp]	5.3	0.9235
AT3G50150			Plant protein of unknown funct...		Lus10010065 [exp]	5.7	0.9059
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10015386 [exp]	5.9	0.9101
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10030383 [exp]	7.4	0.9166
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10010843 [exp]	7.5	0.8996
AT2G17080			Arabidopsis protein of unknown...		Lus10014447 [exp]	8.1	0.9120

Compare expression of checked genes

Lus10035167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.