Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15620 78 / 8e-18 Uncharacterised protein family (UPF0497) (.1) AT4G25040 69 / 1e-14 Uncharacterised protein family (UPF0497) (.1) AT4G15630 69 / 3e-14 Uncharacterised protein family (UPF0497) (.1) AT5G15290 59 / 1e-10 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT1G03700 58 / 1e-10 Uncharacterised protein family (UPF0497) (.1) AT4G03540 58 / 1e-10 Uncharacterised protein family (UPF0497) (.1) AT1G17200 54 / 4e-09 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) AT2G27370 54 / 1e-08 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) AT3G06390 49 / 5e-07 Uncharacterised protein family (UPF0497) (.1) AT4G16442 48 / 5e-07 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031998 [exp] 369 / 1e-131 AT4G15620 80 / 1e-18 Uncharacterised protein family (UPF0497) (.1) Lus10032005 [exp] 234 / 2e-79 AT4G15620 65 / 1e-13 Uncharacterised protein family (UPF0497) (.1) Lus10012562 [exp] 194 / 9e-63 AT4G15620 77 / 1e-17 Uncharacterised protein family (UPF0497) (.1) Lus10041528 [exp] 168 / 2e-53 AT4G15620 74 / 5e-17 Uncharacterised protein family (UPF0497) (.1) Lus10032548 [exp] 91 / 2e-22 AT1G03700 62 / 3e-14 Uncharacterised protein family (UPF0497) (.1) Lus10043192 [exp] 75 / 3e-17 AT4G25040 61 / 3e-12 Uncharacterised protein family (UPF0497) (.1) Lus10012809 [exp] 69 / 2e-14 AT4G15630 179 / 4e-57 Uncharacterised protein family (UPF0497) (.1) Lus10033971 [exp] 66 / 2e-13 AT4G15630 162 / 1e-51 Uncharacterised protein family (UPF0497) (.1) Lus10042471 [exp] 60 / 7e-11 AT1G17200 242 / 6e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G062100 [exp] 125 / 3e-36 AT4G25040 82 / 6e-20 Uncharacterised protein family (UPF0497) (.1) Potri.001G323700 [exp] 114 / 1e-31 AT4G15620 75 / 8e-17 Uncharacterised protein family (UPF0497) (.1) Potri.012G104300 [exp] 100 / 2e-26 AT4G25040 97 / 7e-26 Uncharacterised protein family (UPF0497) (.1) Potri.015G103600 [exp] 98 / 1e-25 AT4G25040 90 / 9e-23 Uncharacterised protein family (UPF0497) (.1) Potri.019G100300 [exp] 70 / 4e-15 AT1G03700 150 / 6e-47 Uncharacterised protein family (UPF0497) (.1) Potri.011G052100 [exp] 69 / 1e-14 AT4G03540 100 / 2e-27 Uncharacterised protein family (UPF0497) (.1) Potri.013G131700 [exp] 69 / 4e-14 AT1G03700 159 / 9e-50 Uncharacterised protein family (UPF0497) (.1) Potri.004G043300 [exp] 62 / 4e-12 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.001G436400 [exp] 58 / 3e-10 AT1G17200 245 / 1e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.008G205100 [exp] 52 / 3e-08 AT4G15630 144 / 1e-43 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10035168 pacid=23162490 polypeptide=Lus10035168 locus=Lus10035168.g ID=Lus10035168.BGIv1.0 annot-version=v1.0 ATGGAAGGTGGGAGCATCAGACAAGGATCAGCAGCAGCCAAGACATCATCAAGATCACCACCATCGGCCGCTACTAGCAGAGGTGCTAATCAGCAGCATC AGATGCAACAAAGAGCTGGCTTGACATTGCTAATGGCTCAACTCGCAATGCTCAAGGTATTCGCCATAGCCTTCACCGTCTCTGCAATCTGCATTGTTTA CACCAGCGGCCAGAATGTCTTAGTCTACAATATCCCTTTCTCCGCTCGCTTCTCTTACTCCTCCGCTTACAAGTTTTTGGTTGATGCGAATATAATCGTT TGTGCATCCTCGATGGTGTCTCTGATCTGTATCTGGGTGCTGGGGAAGAACATCTCTCCACCTCAGCTCCCATTCAGACTTTTCTACCTCCTACTCCATG ACATTGTGATGATGGGGCTAATGACGGCTGGATGTGCAGCAGCATCAGCAGTGGGACTGGTGGGATACAATGGGATCGACAAGATTGGTTGGGTGGCCAT CTGTGGAAACGTTACCAAGTTCTGTCACAAGATGCTGGCTGCTGTCATCTTGTCCTACTTGTCCCTCGTCACTTACTTGGCTCTCACCTTTATCTCTGCC TTCAAACTAGCTTCCATTTCTTCTCACTGA
AA sequence Show only first row Show all	>Lus10035168 pacid=23162490 polypeptide=Lus10035168 locus=Lus10035168.g ID=Lus10035168.BGIv1.0 annot-version=v1.0 MEGGSIRQGSAAAKTSSRSPPSAATSRGANQQHQMQQRAGLTLLMAQLAMLKVFAIAFTVSAICIVYTSGQNVLVYNIPFSARFSYSSAYKFLVDANIIV CASSMVSLICIWVLGKNISPPQLPFRLFYLLLHDIVMMGLMTAGCAAASAVGLVGYNGIDKIGWVAICGNVTKFCHKMLAAVILSYLSLVTYLALTFISA FKLASISSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15620			Uncharacterised protein family...		Lus10035168 [exp]	0	1
AT1G07520	GRAS		GRAS family transcription fact...		Lus10037757 [exp]	2.8	0.8899
					Lus10022366 [exp]	3.9	0.7812
AT1G65820			microsomal glutathione s-trans...		Lus10020792 [exp]	5.8	0.8582
AT5G26330			Cupredoxin superfamily protein...		Lus10006683 [exp]	7.7	0.8542
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10031027 [exp]	8.4	0.8362
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10011582 [exp]	14.8	0.7959
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023363 [exp]	16.5	0.7709
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040324 [exp]	17.9	0.8574
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10022760 [exp]	18.3	0.7965
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031726 [exp]	20.5	0.7834

Compare expression of checked genes

Lus10035168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.