Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14010 64 / 3e-13 C2H2ZnF KNUCKLES, KNU KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G66140 64 / 8e-13 C2H2ZnF ZFP4 zinc finger protein 4 (.1) AT1G80730 59 / 4e-11 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT5G01860 58 / 1e-10 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G24625 57 / 3e-10 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT5G57520 55 / 5e-10 C2H2ZnF ATZFP2, ZFP2 zinc finger protein 2 (.1) AT5G25160 56 / 6e-10 C2H2ZnF ZFP3 zinc finger protein 3 (.1) AT5G10970 56 / 1e-09 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G05120 55 / 1e-09 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G06650 55 / 1e-09 C2H2ZnF GIS2 GLABROUS INFLORESCENCE STEMS 2, C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014350 [exp] 57 / 3e-10 AT1G80730 110 / 1e-29 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10026597 [exp] 56 / 3e-10 AT1G66140 85 / 1e-20 zinc finger protein 4 (.1) Lus10010388 [exp] 57 / 5e-10 AT1G24625 88 / 4e-21 zinc finger protein 7 (.1) Lus10028997 [exp] 56 / 5e-10 AT1G24625 103 / 1e-27 zinc finger protein 7 (.1) Lus10018328 [exp] 56 / 6e-10 AT5G10970 94 / 6e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10003681 [exp] 56 / 7e-10 AT1G24625 112 / 9e-31 zinc finger protein 7 (.1) Lus10017125 [exp] 56 / 8e-10 AT5G10970 95 / 4e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10006960 [exp] 54 / 1e-09 AT5G57520 92 / 2e-24 zinc finger protein 2 (.1) Lus10025471 [exp] 54 / 1e-09 AT5G57520 92 / 3e-24 zinc finger protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G324600 [exp] 65 / 2e-13 AT5G14010 75 / 5e-17 KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.003G192000 [exp] 60 / 4e-11 AT5G25160 82 / 4e-18 zinc finger protein 3 (.1) Potri.018G021400 [exp] 60 / 4e-11 AT5G10970 165 / 8e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G261700 [exp] 59 / 7e-11 AT5G10970 166 / 4e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G298700 [exp] 58 / 8e-11 AT1G24625 86 / 1e-20 zinc finger protein 7 (.1) Potri.001G047500 [exp] 59 / 1e-10 AT5G10970 143 / 5e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.009G093300 [exp] 58 / 1e-10 AT1G24625 89 / 6e-22 zinc finger protein 7 (.1) Potri.004G084100 [exp] 58 / 2e-10 AT1G66140 164 / 6e-50 zinc finger protein 4 (.1) Potri.010G102700 [exp] 58 / 2e-10 AT1G66140 157 / 4e-47 zinc finger protein 4 (.1) Potri.003G180600 [exp] 58 / 2e-10 AT5G10970 144 / 1e-41 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035169 pacid=23162530 polypeptide=Lus10035169 locus=Lus10035169.g ID=Lus10035169.BGIv1.0 annot-version=v1.0 ATGGCGGATCCGGCCATGTTCAACTTCCTCAACCCTCATTACTACTACAACACCTCCTCACATCCCGCTACCTTCACCTACCCTGAATTACCTCCAGTTG ATAACCACCACCCTAACTCCTCTTCCGCCGACTTCCCCTCCCCGCCGCCCACTCCTCGAACATCTCGTAAATCTCCCAACTCCAACTCCTCCTCTTCCTC CGGCGGCCGCCGCGTCTTCTCCTGCACCTACTGCCCTCGCCAGTTCCACACTTCTCAAGCGCTCGGCGGCCACCAAAACGCCCACAAGAGAGAGAGAGAC GCCACCCGCAGAAACAACCTCCTCCTCCACGTGCACTCCGACTTTCCCGGACGTACATCACACAGTCATCGATTCGGACGCTGGAGGGCCCCACATCGGC TGTGGGACCGGGTATCCGTATCAGTGCTGCTCTGCCGCGGTGTACCAGCCGGCACCGTATCATCATCAGCAGCAGCAGGGGTTTAA
AA sequence Show only first row Show all	>Lus10035169 pacid=23162530 polypeptide=Lus10035169 locus=Lus10035169.g ID=Lus10035169.BGIv1.0 annot-version=v1.0 MADPAMFNFLNPHYYYNTSSHPATFTYPELPPVDNHHPNSSSADFPSPPPTPRTSRKSPNSNSSSSSGGRRVFSCTYCPRQFHTSQALGGHQNAHKRERD ATRRNNLLLHVHSDFPGRTSHSHRFGRWRAPHRLWDRVSVSVLLCRGVPAGTVSSSAAAGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10035169 [exp]	0	1
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10018624 [exp]	1.0	0.9952
AT2G40390			unknown protein		Lus10009844 [exp]	5.2	0.9653
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	5.5	0.9899
AT1G17400			unknown protein		Lus10039921 [exp]	6.0	0.9544
AT4G32090			Beta-1,3-N-Acetylglucosaminylt...		Lus10012177 [exp]	6.6	0.9459
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	9.5	0.9786
AT4G40070			RING/U-box superfamily protein...		Lus10035931 [exp]	10.1	0.9395
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024077 [exp]	11.0	0.9786
AT4G03010			RNI-like superfamily protein (...		Lus10033744 [exp]	11.0	0.9766
AT5G46230			Protein of unknown function, D...		Lus10000355 [exp]	11.7	0.9436

Compare expression of checked genes

Lus10035169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.