Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41110 330 / 2e-104 unknown protein AT3G26890 318 / 1e-99 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031999 [exp] 1137 / 0 AT3G26890 400 / 3e-131 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G324700 [exp] 355 / 1e-112 AT3G26890 415 / 1e-135 unknown protein Potri.015G103500 [exp] 298 / 1e-91 AT3G26890 231 / 2e-66 unknown protein Potri.012G104200 [exp] 255 / 1e-75 AT5G41110 302 / 2e-93 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035170 pacid=23162576 polypeptide=Lus10035170 locus=Lus10035170.g ID=Lus10035170.BGIv1.0 annot-version=v1.0 ATGGGTTTGCCTCAAGTTTCATCAGCTGATGGCAAGAATGTGTTTACGATAGCTCCACCTGGTACTTTTATTCGAAGCTCGCCTCGGTCTTCTAGCGTGG GCACTTGTGACTTGGATGGACTTGGTTGTGAGGGTATAAGCAGAAGGATGGTTGGAGGGGATACTCTTAGTTCTTTAGGCAATTTCCCAGAGAGAACCTA TTTGCCAGTTTCAAACTTTAGGAATGCTGCATTCAGTTTCGGGGAGGCGGAGTTTGGTTATAATGTAAACAAAACGGTGCGACTTAGCTCCAACACTGAG ACTGTTAGAAATGTCCAGAAGCCTGCTGCAAGGATTGTGGGGTTTGAATCCCGGGGAACGAGTTCTTGTCGCACTGTACTGACTGAAGGTCCTTCTGGAT TCTATATTGGTCCTGCTTCAGGTACTGATGGTAATGTTACTGAAACAGAATTGAGTGTGTCAACTGTCAAGAAGCGGTTATTGTCACCATTGAGTGGCAT GCTATCTGCAAAGCAATTCAATGGGGATTCTCTGAATATTGGTTCCCATGCTTCTCAGACGCATTATTATGATAACAAGAAGGCAAATGTTGGAACCAAG GTTAATTTCACCGTGCCATCATGCCACGTTACTAGTTGCTTGGAACAGAAGGAAATGGTGTATGATAGTAGTTCAAAGACGGATGCTACAGATGGTCCTT TGCTAGATAACAAAGAATTCAACGATGGAAGATCATGGATTAAGGCAATATCGTTATCCCCCAAGAAGTCTAGTTCTCCTCTTTCTATGTCTCCTCTAGG CCCTAGATTTCCTGAAAGAATCAAAAGCCTAAGAGCATGCTTGGATTTCAATAACAGGGAATCACTCCATCAGCGTGATGACTCTTGCTTTGTGTTTGGT TCAGAAGAAGTAGGCAACATTTCAAGTAGATCACTTGAAGAAGATGATCTGTTTTGCAAACAATTCCAGTCATGTTCTCCTGATGACTTGAGCTGGTCTT TATTCCAAGGACCGGCTCCATCCCACGGCATCAAGTTTGTTAGAAGTCTGAGTGGTCTCTCTGTTAGACGGTCTTTGGTTGGTTCGTTTGAAGAGTCGCT ATTATCTGGAAGGTTTTTCTCGGGAAAATGCACTCAGAAAATAGATGGTTTCCTTGCTGTATTAAGCATTACCGGAGGGAACTTCTCACCACAATCACAG AAGCTCCCATTTTCAGTTACCAGTGTACATGAAGATTGTCACTTACTGTACTACGCATCTATAGATGTACCTGGGAACACATCGTCGAATAAGCAAAGAG GGATCAGATGGAGTAAAGATGTGAATAATGGTGATTCACAAACTGTTAGGAGCCGCTTGCGTGTTCCTGTCAAAGGACGGATTCAGCTGGTTCTCAGCAA CCCTGAAAGGACGCCTCTACACACCTTCCTTTGCAACTATGATTTGAGTGATATGCCAACCGGTACCAAGACCTTTCTGCGGCAGAAGGTGACCCTTGCT TCCGGGACAAGTCTGCCCGAGCAGATGGGCTCGGAGAAGAAGGTGGTTAGCAACAATGGATGCAAGAAATCATCATCTAGGGAGGAGGATGATCCATGTA GAAAGTCAAGTGATCATCAGATGGGTGTAAAGATCAACGAGCATAGCCCCCGTGGAGGATGTGGTCCTCTCCGTTACGCACTCCATCTCCGGTTCTTGTG CCCTTCGCCTAAAAGGTCTCCTAGTAAGGCAGAGAAGTCGCCGAATGCTGGAGTTTCACGTAATGTAGCATCAGGAGCAGTGGACGAGCGTAGGTTCTAC TTGTACAATGACTTGAAGGTGGTGTTTCCTCAGCGCCATACTGATGCCGATGAGGGGAAGTTGAATGTGGAGTGTCATTTCCCAGAAGATCCAAGATATT TCAACATTACCAGCTGA
AA sequence Show only first row Show all	>Lus10035170 pacid=23162576 polypeptide=Lus10035170 locus=Lus10035170.g ID=Lus10035170.BGIv1.0 annot-version=v1.0 MGLPQVSSADGKNVFTIAPPGTFIRSSPRSSSVGTCDLDGLGCEGISRRMVGGDTLSSLGNFPERTYLPVSNFRNAAFSFGEAEFGYNVNKTVRLSSNTE TVRNVQKPAARIVGFESRGTSSCRTVLTEGPSGFYIGPASGTDGNVTETELSVSTVKKRLLSPLSGMLSAKQFNGDSLNIGSHASQTHYYDNKKANVGTK VNFTVPSCHVTSCLEQKEMVYDSSSKTDATDGPLLDNKEFNDGRSWIKAISLSPKKSSSPLSMSPLGPRFPERIKSLRACLDFNNRESLHQRDDSCFVFG SEEVGNISSRSLEEDDLFCKQFQSCSPDDLSWSLFQGPAPSHGIKFVRSLSGLSVRRSLVGSFEESLLSGRFFSGKCTQKIDGFLAVLSITGGNFSPQSQ KLPFSVTSVHEDCHLLYYASIDVPGNTSSNKQRGIRWSKDVNNGDSQTVRSRLRVPVKGRIQLVLSNPERTPLHTFLCNYDLSDMPTGTKTFLRQKVTLA SGTSLPEQMGSEKKVVSNNGCKKSSSREEDDPCRKSSDHQMGVKINEHSPRGGCGPLRYALHLRFLCPSPKRSPSKAEKSPNAGVSRNVASGAVDERRFY LYNDLKVVFPQRHTDADEGKLNVECHFPEDPRYFNITS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26890			unknown protein		Lus10035170 [exp]	0	1
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10016791 [exp]	2.0	0.8730
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10001296 [exp]	3.3	0.8860
AT5G61670			unknown protein		Lus10016713 [exp]	3.7	0.8808
AT1G55000			peptidoglycan-binding LysM dom...		Lus10004477 [exp]	3.9	0.8651
AT1G48840			Plant protein of unknown funct...		Lus10020973 [exp]	6.0	0.8736
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Lus10002872 [exp]	8.1	0.8267
AT3G45620			Transducin/WD40 repeat-like su...		Lus10034751 [exp]	8.1	0.8560
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	11.2	0.8557
AT1G55535			unknown protein		Lus10010333 [exp]	11.2	0.8346
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10029916 [exp]	11.5	0.8421

Compare expression of checked genes

Lus10035170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.