Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26900 191 / 9e-60 ATSKL1 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3) AT2G21940 104 / 4e-26 ATSK1 shikimate kinase 1 (.1.2.3.4.5) AT4G39540 97 / 2e-23 ATSK2 shikimate kinase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032000 [exp] 392 / 1e-138 AT3G26900 141 / 5e-40 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3) Lus10035843 [exp] 99 / 7e-24 AT2G21940 304 / 5e-103 shikimate kinase 1 (.1.2.3.4.5) Lus10036626 [exp] 96 / 4e-22 AT5G64860 482 / 1e-165 disproportionating enzyme (.1) Lus10030990 [exp] 44 / 6e-05 AT2G35500 445 / 6e-154 shikimate kinase-like 2, shikimate kinase like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G062800 [exp] 216 / 1e-69 AT3G26900 291 / 9e-99 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3) Potri.005G084600 [exp] 102 / 1e-25 AT2G21940 304 / 2e-103 shikimate kinase 1 (.1.2.3.4.5) Potri.007G081000 [exp] 101 / 4e-25 AT2G21940 323 / 9e-111 shikimate kinase 1 (.1.2.3.4.5) Potri.002G061100 [exp] 89 / 1e-20 AT2G21940 224 / 2e-72 shikimate kinase 1 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01202 [flax] [poplar] SKI Shikimate kinase
Representative CDS sequence Show only first row Show all	>Lus10035171 pacid=23162471 polypeptide=Lus10035171 locus=Lus10035171.g ID=Lus10035171.BGIv1.0 annot-version=v1.0 ATGGAGGTTGTGAGCAATCCTACTACTACTACTACTACTCATTTCTTCTTTTCTTATTCCCGCGGGGTTCATTTCCCGCCTCTTTCCAATTCTCTTGTCC GTTTCCCTAAAGCTTCTTTCACTCTCGCTTCTCCTTCTGTTGTCTCGCTCCGCAAACCCATCCCCATCACCACCATCAATCGCGCTCTTACGGGTGACGA TGATGGACTTGACCTGGATGGTCCTATGTTCGAAGCTAGGAAGTTGGCAGATAATTTATCACTAAAAGGAACTTCCCTATTCCTCCTAGGAACGAAATGC GCCATGAAATTGACCTTGGGGAGGCTTCTGGCGGATGTGTTCGGCTATGTTTTTATCGACAGTGATGATGTGGTAAATCAAGCCGCTGGTGGTGCCGCTG CTGCCAAAACTTTCAGAGAGAGTGATCAGGCGGGATTTCGTGAGGCTGAGACAGAAGTGTTGAAGCAATTGTCAGCCATGGGAAGGCTGGTGGTCTCTGC TGGAGATGGGGCTGTTCAAAGCTCAACCAACCTGGTTCTTCTGAGAGATGGGATCTCTCTATGGATAGACATTCCTTTATCCGTTGCAACCATCGGCAAG CCACCCGACAACCCAGAGTTTCTTGCTGCGTACGAAGAGCTTAGAGGTGGATACAGTACAGCTGATGCAACAGTTTCCCTCCCACGGATAGCTGCTAAAG AAAACTACGAATCGTTCGATTTCGTCACACCTGAAGATATGGTGCTGGAGGCTGTGAGAGAGATAGGGAAGCTGACAAGGGTAAAGAAGATGATGGAAGA AGCAGCTACACCATTTTAG
AA sequence Show only first row Show all	>Lus10035171 pacid=23162471 polypeptide=Lus10035171 locus=Lus10035171.g ID=Lus10035171.BGIv1.0 annot-version=v1.0 MEVVSNPTTTTTTHFFFSYSRGVHFPPLSNSLVRFPKASFTLASPSVVSLRKPIPITTINRALTGDDDGLDLDGPMFEARKLADNLSLKGTSLFLLGTKC AMKLTLGRLLADVFGYVFIDSDDVVNQAAGGAAAAKTFRESDQAGFREAETEVLKQLSAMGRLVVSAGDGAVQSSTNLVLLRDGISLWIDIPLSVATIGK PPDNPEFLAAYEELRGGYSTADATVSLPRIAAKENYESFDFVTPEDMVLEAVREIGKLTRVKKMMEEAATPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Lus10035171 [exp]	0	1
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Lus10032000 [exp]	1.0	0.9701
AT1G01080			RNA-binding (RRM/RBD/RNP motif...		Lus10030194 [exp]	1.4	0.9587
AT4G15510			Photosystem II reaction center...		Lus10000614 [exp]	2.4	0.9569
AT4G30845			unknown protein		Lus10026098 [exp]	6.0	0.9287
AT1G49975			unknown protein		Lus10033771 [exp]	6.3	0.9389
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10008721 [exp]	6.7	0.9359
AT4G24750			Rhodanese/Cell cycle control p...		Lus10019454 [exp]	6.9	0.9256
AT4G19100		PAM68	photosynthesis affected mutant...		Lus10012152 [exp]	10.4	0.9372
AT2G44920			Tetratricopeptide repeat (TPR)...		Lus10000520 [exp]	12.7	0.9370
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Lus10040693 [exp]	14.1	0.9379

Compare expression of checked genes

Lus10035171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.