Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33490 362 / 1e-116 hydroxyproline-rich glycoprotein family protein (.1) AT3G26910 312 / 9e-98 hydroxyproline-rich glycoprotein family protein (.1.2) AT5G41100 308 / 2e-96 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032001 [exp] 1033 / 0 AT2G33490 473 / 8e-160 hydroxyproline-rich glycoprotein family protein (.1) Lus10002580 [exp] 336 / 1e-106 AT2G33490 484 / 3e-164 hydroxyproline-rich glycoprotein family protein (.1) Lus10001808 [exp] 337 / 4e-105 AT2G33490 475 / 1e-158 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063000 [exp] 619 / 0 AT2G33490 435 / 1e-144 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G324800 [exp] 592 / 0 AT2G33490 421 / 2e-139 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G061500 [exp] 419 / 2e-138 AT2G33490 478 / 8e-162 hydroxyproline-rich glycoprotein family protein (.1) Potri.003G166300 [exp] 380 / 1e-123 AT2G33490 493 / 1e-167 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035172 pacid=23162551 polypeptide=Lus10035172 locus=Lus10035172.g ID=Lus10035172.BGIv1.0 annot-version=v1.0 ATGAAGTCCCCGTTACGGAAGTTCCGGGGATTTAAGCTCCACAAGAGCGATTCCAAAGGTAAGCGGGACTTCTTGCATCCTGCGCACTTGGATGAGCTCG CTGAAGCTGCTCAGGATATGCAAGACATGAGAAACTGCTATGATAGCTTACTTTCAGCTGCTGCTGCAACGGCAAACAGTGCTTATGAATTCTCGGAGTC ACTACGGGAAATGGGCACATGCTTACTGGAGAAGACTGCACTGCACGATGATGAAGAAAGTGGTAAAAGTGAAAGTAGATTATGTAGTTGTTTACTGTCC TTATTTCAATTCTTATCTAAAAATCGGCCCGGGCGGTCTCACATATTCCTGACAATCACGAATCCATCAGAGTCTCTTCTAAATGAACTTCGGACAGTTG AGGATATGAAAAGACAATGTGATGAGAAAAGGAATGTATATGAATACATCGCTGCTCAACAAAAAGACAAGGGAAGGTCAAAGAGTTCAAAAGGTGATAG TTTTACTCCGGAGCAATTACGAACTGCTCATGATGAATATAATGAAGAGGCAACACTGTGCATTTTCCGATTGAAGTCTCTGAAACAAGGGCAGTCCAGA AGCTTATTAACTCAAGCAGCTCGTCATCATGCAGCTCAGTTAAATTTCTTTAGGAAAGGACTCAAGTCACTTGAGGTAGTTGATCCACAAGTAAGACTTG TTACCGAACAGCACCATATTGATTACCAGTTCAGTGGACTTGAAGATGATGGCAGGGGAGATGCAGAAGATGACGGTGAAACTATTGATGATACAAATGC AGAAGGGGAACTAAGTTTTGACTATAGAATAAATAAGACACATAATGAGACTTCGACTTCAAGGAATTCAATGGAGGTAGATGAAGATTTGTCATTTCCG CGACATTCTAGAACAGAAAATGCTGAGTTGAACCTGGACAGGGATCAAGGGGATTTGCATATATATAGATCTGGAAGTCACTCGGCTCCAATTTTTCCTG AAAGGAAGATTGATCCAATCGAAAGATTACGACAGATGCAGAAGTCACCAAGGAAGAGTAATGCTTATGTGCTCCCCAGACCAACTGATACTAAGATTCC AGGCGCTCCCAGAACAAGTGTTTTAAATCCACCGACTAAGTCAACAGATTATGCCGGACGGGCCAATTTGTGGCATTCCTCCCCGTTGGAACAGAAGAGA AATGAGAAGGATTCCGCTGAAGGTCATCTTTCGGACTTGAATGCCTTGAGACCACGTCAAGCACAGAAAGAGAGCAACAGCAGTAACTCCTCGACTCAGT TGCCGCCCCCTCCATCATCAGATGGAATGTCACTTCCACAACCTGACTCATATAATGCATCTGATAGCAAAAAGAAAAGACTCTCTTTCTCTGGCCCAAT AATTGGCAAGAATTTGCCAACAAAGCAAGGGTTCTCTGCCAGTGGTCCGATTCCTTCTCCTGAACTGCCTCAACAGGTTTCTGGGTTGCTGTCTCGGATA CCAGCTTATCAGCCTTCTGCATCTCCAAAAGTATCGCCAACTGCATCACCTCCTCTTTCATCTCCCAGAATTAGTGAACTTCATGAACTTCCTAGGCCAC CCGGAATGCTAGCAGGGAAATCAGCAAAAGCTACATCATCATCCAGTGGCCACTCTGCCCCTCTAGTTAGGAGTAGTAACGAGGCTTATGGAACAATCAG GAGTTCTGGCGGGACAACTTTAGCTTCCCCTCTTCCGATACCTCCATCATTATCTGTATCTAGAAGTTTCTCAATACCTTCAAGCAGCCAGAGAGGCATG ACTTTACAAGGCAAGGCTGAAGATACCGACTCCCCACCGTTGACACCGATTTCACTTGCAAATCTTAGATCAGCAGCTGCAGTTACTGAGGTTTTCTCCC CTCGCACCGGCCAAATTAGAGGTAATTTACAGTCCATGTCATAG
AA sequence Show only first row Show all	>Lus10035172 pacid=23162551 polypeptide=Lus10035172 locus=Lus10035172.g ID=Lus10035172.BGIv1.0 annot-version=v1.0 MKSPLRKFRGFKLHKSDSKGKRDFLHPAHLDELAEAAQDMQDMRNCYDSLLSAAAATANSAYEFSESLREMGTCLLEKTALHDDEESGKSESRLCSCLLS LFQFLSKNRPGRSHIFLTITNPSESLLNELRTVEDMKRQCDEKRNVYEYIAAQQKDKGRSKSSKGDSFTPEQLRTAHDEYNEEATLCIFRLKSLKQGQSR SLLTQAARHHAAQLNFFRKGLKSLEVVDPQVRLVTEQHHIDYQFSGLEDDGRGDAEDDGETIDDTNAEGELSFDYRINKTHNETSTSRNSMEVDEDLSFP RHSRTENAELNLDRDQGDLHIYRSGSHSAPIFPERKIDPIERLRQMQKSPRKSNAYVLPRPTDTKIPGAPRTSVLNPPTKSTDYAGRANLWHSSPLEQKR NEKDSAEGHLSDLNALRPRQAQKESNSSNSSTQLPPPPSSDGMSLPQPDSYNASDSKKKRLSFSGPIIGKNLPTKQGFSASGPIPSPELPQQVSGLLSRI PAYQPSASPKVSPTASPPLSSPRISELHELPRPPGMLAGKSAKATSSSSGHSAPLVRSSNEAYGTIRSSGGTTLASPLPIPPSLSVSRSFSIPSSSQRGM TLQGKAEDTDSPPLTPISLANLRSAAAVTEVFSPRTGQIRGNLQSMS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33490			hydroxyproline-rich glycoprote...		Lus10035172 [exp]	0	1
AT2G33490			hydroxyproline-rich glycoprote...		Lus10032001 [exp]	2.4	0.8688
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10040071 [exp]	3.2	0.8830
					Lus10034752 [exp]	5.5	0.8734
AT5G48290			Heavy metal transport/detoxifi...		Lus10025181 [exp]	5.8	0.8837
AT3G53810			Concanavalin A-like lectin pro...		Lus10016506 [exp]	9.5	0.8703
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10001902 [exp]	10.2	0.8715
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10018839 [exp]	13.0	0.8614
					Lus10034740 [exp]	17.6	0.8542
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10008015 [exp]	21.8	0.8590
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Lus10040069 [exp]	22.3	0.8672

Compare expression of checked genes

Lus10035172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.