Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14000 107 / 2e-28 NAC ANAC084 NAC domain containing protein 84 (.1) AT2G33480 103 / 2e-26 NAC ANAC041 NAC domain containing protein 41 (.1.2) AT5G13180 100 / 3e-25 NAC VNDIP2, ANAC083, VNI2 VND-interacting 2, NAC domain containing protein 83 (.1) AT5G07680 99 / 5e-24 NAC ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2) AT5G61430 98 / 1e-23 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1) AT5G39610 96 / 2e-23 NAC ORE1, AtNAC2, ANAC092, ATNAC6 ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1) AT3G04070 96 / 5e-23 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT3G15510 96 / 8e-23 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT5G46590 94 / 2e-22 NAC ANAC096 NAC domain containing protein 96 (.1) AT1G61110 94 / 3e-22 NAC ANAC025 NAC domain containing protein 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032004 [exp] 381 / 6e-135 AT5G14000 113 / 2e-30 NAC domain containing protein 84 (.1) Lus10012557 [exp] 192 / 1e-60 AT5G14000 122 / 4e-34 NAC domain containing protein 84 (.1) Lus10041534 [exp] 184 / 8e-58 AT2G33480 125 / 1e-34 NAC domain containing protein 41 (.1.2) Lus10002581 [exp] 107 / 8e-28 AT5G13180 273 / 6e-93 VND-interacting 2, NAC domain containing protein 83 (.1) Lus10001809 [exp] 105 / 2e-27 AT5G13180 271 / 6e-92 VND-interacting 2, NAC domain containing protein 83 (.1) Lus10011215 [exp] 98 / 1e-23 AT1G61110 305 / 1e-102 NAC domain containing protein 25 (.1) Lus10026617 [exp] 96 / 2e-23 AT1G69490 298 / 1e-101 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10003269 [exp] 97 / 3e-23 AT3G04070 324 / 3e-109 NAC domain containing protein 47 (.1.2) Lus10006547 [exp] 97 / 3e-23 AT3G04070 337 / 4e-114 NAC domain containing protein 47 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325100 [exp] 145 / 8e-43 AT5G13180 163 / 2e-49 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.017G063300 [exp] 138 / 1e-39 AT5G13180 150 / 9e-45 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.015G102100 [exp] 113 / 2e-30 AT5G13180 232 / 8e-77 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.012G103500 [exp] 109 / 1e-28 AT5G13180 229 / 2e-75 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.003G166500 [exp] 107 / 5e-28 AT5G13180 310 / 4e-107 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.001G061200 [exp] 105 / 3e-27 AT5G13180 310 / 6e-107 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.009G052300 [exp] 100 / 4e-24 AT1G01720 179 / 2e-53 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.012G001400 [exp] 99 / 8e-24 AT5G61430 448 / 1e-158 NAC domain containing protein 100 (.1) Potri.004G038000 [exp] 97 / 2e-23 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.006G129400 [exp] 97 / 2e-23 AT1G61110 247 / 3e-80 NAC domain containing protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10035174 pacid=23162600 polypeptide=Lus10035174 locus=Lus10035174.g ID=Lus10035174.BGIv1.0 annot-version=v1.0 ATGGAGAAACAGAGCATGAATGGAGGAGGAGGAGGTGGAATCAAGCTCCCTATTGGATACAGATTCCGACCAACAGATGAGGAGCTCATCGTTCATTACC TCAGACGTAAGGTGTTTGGTCTACCTTTGCCCGCTTCTGTCATCCCTGACCTCGATCATCCTTCCACTGCTCTGCCAGCAGGTAACCCAAGTGAGAAAAT GTACTTCTTTTGCAAAGGAGATGATCATAACGGAAGTAACAAGATTGTGGAGGAGAAAGGAGGTTACTGGAAGCATACTGGGAAAGCCAGGCATATTTTT GCAGCGTCTTCTTCCAACAACCAATTAGTCGGGATTAGGAGAAGTCTGGTTTTCCAGGCACATAACGGCAAAAGAAAAAAGAGCCAAACTTATAAGTGGG TCATGCATGAGTTCTGCCTTGTGGGTTTCGTCACTACCCCCTTTACAAATCAGATATCAATGGTGAAGGTGGGAGAGTGGGTTTTGTGCAGTGTGTTCCA GAAGAAGAGAAGGGCTACTACTAATACTAACAAGAAGAAGCTCATCACAAGATGTTCTACTTCACCAAATCCAGTTGCAGAAGGTTCCATGGATTTTAGA GTGGATGAGTTGTCTGATGCAGGGCCTAGTTGTGATGATCATGAAGAGGAAGAAGAAGAAGAAGAAGGAAAGGTGGGATCTTTGAGTGGAATCACAGAAC TTTCTTCTACAAAATCTTCATCATCAAGAGGGTTATTATCAGTAGAGGAAGAAGATATTACTTCTAGTCAGAGATAG
AA sequence Show only first row Show all	>Lus10035174 pacid=23162600 polypeptide=Lus10035174 locus=Lus10035174.g ID=Lus10035174.BGIv1.0 annot-version=v1.0 MEKQSMNGGGGGGIKLPIGYRFRPTDEELIVHYLRRKVFGLPLPASVIPDLDHPSTALPAGNPSEKMYFFCKGDDHNGSNKIVEEKGGYWKHTGKARHIF AASSSNNQLVGIRRSLVFQAHNGKRKKSQTYKWVMHEFCLVGFVTTPFTNQISMVKVGEWVLCSVFQKKRRATTNTNKKKLITRCSTSPNPVAEGSMDFR VDELSDAGPSCDDHEEEEEEEEGKVGSLSGITELSSTKSSSSRGLLSVEEEDITSSQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10035174 [exp]	0	1
					Lus10034192 [exp]	2.0	0.9506
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10034191 [exp]	2.8	0.9480
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10012668 [exp]	4.9	0.9454
AT3G05170			Phosphoglycerate mutase family...		Lus10015164 [exp]	5.3	0.9324
					Lus10025243 [exp]	9.5	0.9142
AT5G47390	MYB		myb-like transcription factor ...		Lus10004384 [exp]	12.0	0.9191
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Lus10000539 [exp]	13.6	0.9061
AT2G42760			unknown protein		Lus10029248 [exp]	17.3	0.9046
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10013584 [exp]	17.9	0.8942
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10034180 [exp]	17.9	0.9113

Compare expression of checked genes

Lus10035174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.