Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02040 494 / 7e-176 AtGDPD1, SRG3 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) AT5G41080 461 / 6e-163 AtGDPD2 glycerophosphodiester phosphodiesterase 2, PLC-like phosphodiesterases superfamily protein (.1.2) AT5G43300 386 / 3e-133 AtGDPD3 glycerophosphodiester phosphodiesterase 3, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032006 [exp] 730 / 0 AT3G02040 489 / 3e-174 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Lus10012556 [exp] 615 / 0 AT3G02040 499 / 5e-178 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Lus10002582 [exp] 442 / 3e-155 AT5G43300 440 / 2e-154 glycerophosphodiester phosphodiesterase 3, PLC-like phosphodiesterases superfamily protein (.1) Lus10011337 [exp] 407 / 4e-142 AT5G43300 423 / 9e-149 glycerophosphodiester phosphodiesterase 3, PLC-like phosphodiesterases superfamily protein (.1) Lus10041535 [exp] 236 / 1e-77 AT3G02040 205 / 4e-66 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063500 [exp] 555 / 0 AT3G02040 505 / 1e-180 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Potri.001G325200 [exp] 548 / 0 AT3G02040 509 / 0.0 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Potri.001G061100 [exp] 469 / 6e-166 AT3G02040 442 / 1e-155 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF03009 [flax] [poplar] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Lus10035175 pacid=23162475 polypeptide=Lus10035175 locus=Lus10035175.g ID=Lus10035175.BGIv1.0 annot-version=v1.0 ATGGCGTTGAAGGCCGTACATGTCTCCGACGTCCCAACTCTGGATCTCGTCCCTGATAATGTCGCTGTTGCTCCTTCTTTCTCTCTCTTCTCCTCCGGGA TGGAGACGAAGAAAAACAGCAATAAGGTCCCCAAATTTCTGGTGGTTGGACACAGAGGCCACGGGATGAACAATTTCCAGTCTCTTGATCCCAGGATGAA AGCCATTAAAGAGAACACTCTTCTTTCCTTCAATTCCGCCGCTCGTTTCCCTCTCGACTTTGTCGAATTCGACGTTCAGGTTACCAAAGACGGATGCCCC ATAATCTTCCACGATAACTTCATTCTTTCCGAGGATAATGGGACGATCTTCGAGAAAAGAGTGACAGAGCTCTCTCTACCGGAGTTCCTCGCCTACGGCC CGCAGAAGTCATCCACCGGCCCATCAGGAAAATCTCTCTTACGGAAAACCAAAGACGGCCAAATCGTGAAATGGGACGTGGAAAAAGACGAAGCCTTTTG CACACTCCAGGACGCTTTCCAACAAGTGGAAAACCCTGCGTCGCTCGGATTCAACATCGAGCTGAAATTCGACGACCACATAGTCTACAGCCACGACAAC CTCTCCAATGCTCTCGAATCGATACTCACGGTCGTGTTCGAATTTGCGAAAGACCGTCCGGTGATCTTCTCGTCGTTCCAGCCCGACGCTGCCCTGCTGG TGAAGAAGATGCAGAGTGTTTACCCTGTTTATTTCCTGACTGATGCCGGGAGCCAGACGTTTTACGATTCGAGGAGGAATTCGCTGGAGGATGCTATTGG GGTTTGTTTGGAAGGTGGGCTCGAAGGGATTGTGTCTGAGGTTCGAGGGGTGTTCAGGAATCCTGCTGCTGTTGGGAAGATTAAGGAGGCTAAGCTTTCG TTGCTGACGTATGGGAAGTTGAATAATGTGGCGGAAGCGGTGTATATGCAGCATTTGATGGGGATTGATGGGGTGATTGTGGATCTTGTTGAGGAGATTA CTGAGGCGGTCGGGGAGATGATTAAGCCACCGTCGAATAGTGGAGAAGGAAAGTTGTTGGAGGATGAGGAGGTAAAGGAAAGGCCACAGTTTTCAAACAA GGAGATATCGTTTCTGTTGAAGCTGATTCCAGAGTTGATACAGCAGCACTGA
AA sequence Show only first row Show all	>Lus10035175 pacid=23162475 polypeptide=Lus10035175 locus=Lus10035175.g ID=Lus10035175.BGIv1.0 annot-version=v1.0 MALKAVHVSDVPTLDLVPDNVAVAPSFSLFSSGMETKKNSNKVPKFLVVGHRGHGMNNFQSLDPRMKAIKENTLLSFNSAARFPLDFVEFDVQVTKDGCP IIFHDNFILSEDNGTIFEKRVTELSLPEFLAYGPQKSSTGPSGKSLLRKTKDGQIVKWDVEKDEAFCTLQDAFQQVENPASLGFNIELKFDDHIVYSHDN LSNALESILTVVFEFAKDRPVIFSSFQPDAALLVKKMQSVYPVYFLTDAGSQTFYDSRRNSLEDAIGVCLEGGLEGIVSEVRGVFRNPAAVGKIKEAKLS LLTYGKLNNVAEAVYMQHLMGIDGVIVDLVEEITEAVGEMIKPPSNSGEGKLLEDEEVKERPQFSNKEISFLLKLIPELIQQH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10035175 [exp]	0	1
AT3G63220			Galactose oxidase/kelch repeat...		Lus10022061 [exp]	2.8	0.9109
AT2G05910			Protein of unknown function (D...		Lus10033433 [exp]	6.3	0.8837
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10041569 [exp]	13.6	0.8458
AT2G27180			unknown protein		Lus10013375 [exp]	16.7	0.9036
AT2G45720			ARM repeat superfamily protein...		Lus10036559 [exp]	26.5	0.8853
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10001194 [exp]	31.4	0.8736
AT4G17790			SNARE associated Golgi protein...		Lus10000905 [exp]	34.3	0.8516
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10022957 [exp]	35.5	0.8742
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10011587 [exp]	35.8	0.8424
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10039642 [exp]	43.8	0.8218

Compare expression of checked genes

Lus10035175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.