Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41070 313 / 6e-104 DRB5 dsRNA-binding protein 5 (.1) AT3G26932 307 / 5e-102 DRB3 dsRNA-binding protein 3 (.1.2) AT2G28380 281 / 4e-91 DRB2 dsRNA-binding protein 2 (.1) AT3G62800 132 / 4e-35 DRB4 double-stranded-RNA-binding protein 4 (.1.2.3) AT1G09700 99 / 1e-22 DRB1, HYL1 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032007 [exp] 679 / 0 AT5G41070 320 / 8e-107 dsRNA-binding protein 5 (.1) Lus10000721 [exp] 266 / 1e-84 AT2G28380 442 / 3e-153 dsRNA-binding protein 2 (.1) Lus10021471 [exp] 259 / 5e-82 AT2G28380 435 / 2e-150 dsRNA-binding protein 2 (.1) Lus10041311 [exp] 117 / 2e-29 AT2G28380 191 / 1e-57 dsRNA-binding protein 2 (.1) Lus10003362 [exp] 114 / 2e-29 AT2G28380 116 / 1e-30 dsRNA-binding protein 2 (.1) Lus10008422 [exp] 116 / 1e-27 AT5G17920 1389 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10002619 [exp] 97 / 1e-21 AT3G62800 162 / 6e-46 double-stranded-RNA-binding protein 4 (.1.2.3) Lus10008862 [exp] 95 / 1e-20 AT1G09700 237 / 1e-70 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Lus10023248 [exp] 95 / 1e-20 AT1G09700 232 / 1e-68 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325300 [exp] 367 / 6e-124 AT3G26932 313 / 2e-103 dsRNA-binding protein 3 (.1.2) Potri.017G063700 [exp] 365 / 4e-123 AT5G41070 322 / 2e-106 dsRNA-binding protein 5 (.1) Potri.013G032400 [exp] 294 / 3e-94 AT5G41070 266 / 9e-84 dsRNA-binding protein 5 (.1) Potri.005G045700 [exp] 288 / 5e-92 AT3G26932 258 / 6e-81 dsRNA-binding protein 3 (.1.2) Potri.013G061500 [exp] 132 / 9e-34 AT3G62800 162 / 3e-45 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G038226 [exp] 125 / 4e-33 AT3G62800 146 / 1e-41 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G037900 [exp] 130 / 2e-32 AT3G62800 151 / 8e-40 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G038184 [exp] 124 / 6e-32 AT3G62800 145 / 5e-41 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.009G152900 [exp] 114 / 9e-28 AT3G26932 118 / 4e-29 dsRNA-binding protein 3 (.1.2) Potri.002G111400 [exp] 109 / 1e-26 AT1G09700 214 / 7e-66 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Lus10035176 pacid=23162422 polypeptide=Lus10035176 locus=Lus10035176.g ID=Lus10035176.BGIv1.0 annot-version=v1.0 ATGTTCAAGAACCAGTTACAGGAACTAGCACAGAGAAGCTGCTTCAATCTTCCATCATATGTATGTATAAGAGAAGGTCCTGATCATGCACCAAGGTTCA AGGCTTCAGTGAACTTCAATGGAGAAGTGTTTGAGAGTCCAACTTACAACCCAACATTGAGACAGGCTGAACATTCAGCTGCTGAAGTTGCTCTCAATGT TCTTTCCTCTAGAGGTCCTTCCAGGTCCTTGACAGCAAGAGTCCTGGATGAGACTGGAATATACAAGAACCTGCTTCAGGAAACTGCTCATAGGGCAGGG CTTAATTTACCAGTATACACAACTGTGAGATCAGGGCCAGGCCATGTCCCAATTTTCACATGTACAGTTGAGCTTGCTGGGATGAAATTCACTGGAGATT CAGCCAAGACCAAGAAGCAAGCTGAGAAGAATGCTGCCATTGCAGCTTGGTCTGCACTCAAGAGAACTCCAAGCTTAGATTCATTGACAAACAAAGAACC TGGAGGAGGGAGTTGTGGTGAGAATAAGGAGGACCAAGAGCAAGCAGTTGTGGCGAAGGTGCTTTCCAACTTGAGAAGTAAAGAAGACTCTTCCTCAACA AAACAGGTTGTTGTTAGAAAGAGGGATTACAGCAATTCTTCTATGGCAAGGAGAAGAACGGTAAAGGGACCATCTTTACCATCATCATCAGCTTCTTCTT CTACTTCAAATGTGCAGCAGCAATGCAGGCTTCTGGATCTGATGTTGGAATCAGCCATGAAAGCTACTAGAGATGAAAAAGGAAAGAACTTGTTGTGTCC ATCATTCATGTATCTCCTTCCTCCACCGCCTCCAAGAACCACGTCAAAGATTCTGCCATCAATTTCAGCAGCAGAAAAAGAATACAGTTGTCATAGGATT GCGTCACTGTTTGATAAAGCTGATAAACAGGAACATCAGGCTACTACCACTAAAGGGTTTGCTGACAGGAGGGTTTTGGGATCACTGCAATCAGTTGTGC ACATGGGGAGGCCAATTTACACACCAGGTGCCGGAGGGTTTTTCAGCCATAATAATCCTTCAAGGATGATGGCTCCTGCTGTTCATATTAGGTCAGTGAT TCCAGTCTGTGCATCCCCACCACCGGCAGCAAGACCTCAACCGCCTCCTCCTGAAGTCCCCAACAGAGAGACGGCGGAGTCGTCTAAGCAGCAGCTGAGT CAACCGAGTCCATCCGAGTTCAACAAGAAGCTACAGTTGTAA
AA sequence Show only first row Show all	>Lus10035176 pacid=23162422 polypeptide=Lus10035176 locus=Lus10035176.g ID=Lus10035176.BGIv1.0 annot-version=v1.0 MFKNQLQELAQRSCFNLPSYVCIREGPDHAPRFKASVNFNGEVFESPTYNPTLRQAEHSAAEVALNVLSSRGPSRSLTARVLDETGIYKNLLQETAHRAG LNLPVYTTVRSGPGHVPIFTCTVELAGMKFTGDSAKTKKQAEKNAAIAAWSALKRTPSLDSLTNKEPGGGSCGENKEDQEQAVVAKVLSNLRSKEDSSST KQVVVRKRDYSNSSMARRRTVKGPSLPSSSASSSTSNVQQQCRLLDLMLESAMKATRDEKGKNLLCPSFMYLLPPPPPRTTSKILPSISAAEKEYSCHRI ASLFDKADKQEHQATTTKGFADRRVLGSLQSVVHMGRPIYTPGAGGFFSHNNPSRMMAPAVHIRSVIPVCASPPPAARPQPPPPEVPNRETAESSKQQLS QPSPSEFNKKLQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10035176 [exp]	0	1
					Lus10002011 [exp]	1.0	0.9530
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10022638 [exp]	1.4	0.9505
AT4G35170			Late embryogenesis abundant (L...		Lus10022644 [exp]	2.4	0.9333
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10032007 [exp]	3.2	0.9447
AT5G62360			Plant invertase/pectin methyle...		Lus10031711 [exp]	3.3	0.9099
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013335 [exp]	3.5	0.9497
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10018359 [exp]	3.5	0.9477
					Lus10035486 [exp]	6.0	0.9157
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10027459 [exp]	6.5	0.9291
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10041893 [exp]	7.1	0.9156

Compare expression of checked genes

Lus10035176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.