Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26935 639 / 0 DHHC-type zinc finger family protein (.1) AT5G41060 561 / 0 DHHC-type zinc finger family protein (.1.2) AT3G48760 445 / 6e-154 DHHC-type zinc finger family protein (.1) AT4G24630 390 / 2e-133 DHHC-type zinc finger family protein (.1) AT5G50020 376 / 2e-127 DHHC-type zinc finger family protein (.1.2) AT3G56930 362 / 1e-121 DHHC-type zinc finger family protein (.1.2) AT5G05070 330 / 9e-110 DHHC-type zinc finger family protein (.1) AT2G40990 297 / 4e-97 DHHC-type zinc finger family protein (.1) AT3G56920 293 / 2e-96 DHHC-type zinc finger family protein (.1) AT3G04970 90 / 2e-19 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032009 [exp] 814 / 0 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 429 / 9e-148 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 428 / 3e-147 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10028737 [exp] 395 / 9e-135 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 388 / 2e-131 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10033527 [exp] 349 / 4e-118 AT4G24630 415 / 1e-144 DHHC-type zinc finger family protein (.1) Lus10020844 [exp] 345 / 3e-116 AT5G50020 405 / 3e-140 DHHC-type zinc finger family protein (.1.2) Lus10012096 [exp] 343 / 2e-114 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10035395 [exp] 331 / 8e-107 AT5G05070 463 / 1e-158 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325400 [exp] 684 / 0 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 671 / 0 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 519 / 0 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 489 / 7e-172 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 406 / 2e-139 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 402 / 3e-138 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 400 / 6e-137 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 394 / 1e-134 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.007G077000 [exp] 352 / 2e-119 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 352 / 6e-117 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10035177 pacid=23162427 polypeptide=Lus10035177 locus=Lus10035177.g ID=Lus10035177.BGIv1.0 annot-version=v1.0 ATGTATGTAGTGCCGCCACCTCAGAGATCCGATCCTGGATCTGCTCAGACTGATTTGCTAGTTTACCAGACATGGAAAGGCAGCAATATATTTTTCCTGG GTGGGAGATTCATATTCGGTCCAGATGTGAGATCACTTGCGCTTACTATATTCCTGATCGTTGCGCCAGTTGCAGTTTTCTGCGTTTTTGTTGCTCGAAA ACTAATGGATGACTTCCAAAACGACTGGGGCATATCGATAACAGTTGCTGCTGTTGTATTCACTGTTTATGATTTAGGTCTGCTGCTGCTGACTTCTGGA AGAGATCCTGGCATAATTCCTCGCAATGCACATCCTCCAGAACCTGAAGGATTTGAAGGAAGTGCAGATGTTGGTTCAGGCCAAACTCCACAGTTACGTC TGCCTCGGATCAAGGAGGTGGAGGTTAATGGTATGACTGTGAGAGTCAAGTACTGTGACACATGCATGCTTTACCGGCCTCCTCGTTGCTCACATTGTTC AATATGCAATAACTGCGTGGAGAGATTTGATCATCACTGCCCTTGGGTGGGTCAATGCATCGGTCTGAGAAATTACAGGTTCTTCTTCATGTTTGTCTTT TCAACGACCCTGCTATGTATATATGTCTTTGCATTTAGCTGGGTCTACATTAGGAGGATCATGTCCTCAGAGGACATCACGATTTGGAAAGCTATGATCA AGACCCCTGCCTCCATTGTTCTTATAATCTATACGTTCATATCAATGTGGTTCGTTGGTGGCCTTACAGCTTTCCATTTATATCTAATTAGCACCAATCA GACTACTTATGAGAATTTCAGATACCGATATGATAACCGCGCAAATCCTTACTACAAAGGAGTAGTCGAGAACTTCAAGGAGATATTCTGCTCAAGCATT CCACCATCCAAGAATGATTTCAGGGCCACCGTGCCTAGAGAACCGGTCCTGCCAACTAGATCGGTTGGAGGTGGGGGTTTCATGAGTCCAAACATGGGGA AAGCAGTGGAGGACATCGAGATGGGTAGGAAAACAGTGTGGAGTGACCCAGGGGAAGGCCAGCTCTCTTCTGGAAATGAACGAACAACAGTGAAAGAAGG CGAGTTGAGCGGACTTTCTCCTGATATTCGAACAGCAGTGGCAGAGGAAGCAGGGGAACGCAGCGGTGGAGTCCATCCAAGAAGATCCAGCTGGGGAAGG AAAAGCGGGAGCTGGGAAATGTCGCCGGAAGTTCTGGCTTTAGCGGCAAGAGTAGGTGAATCCAATCGCATGGGTGGTAGCAGTAGCAGCGGCGGGTTGA TGACTGAAAATCGGCTAGCCTAA
AA sequence Show only first row Show all	>Lus10035177 pacid=23162427 polypeptide=Lus10035177 locus=Lus10035177.g ID=Lus10035177.BGIv1.0 annot-version=v1.0 MYVVPPPQRSDPGSAQTDLLVYQTWKGSNIFFLGGRFIFGPDVRSLALTIFLIVAPVAVFCVFVARKLMDDFQNDWGISITVAAVVFTVYDLGLLLLTSG RDPGIIPRNAHPPEPEGFEGSADVGSGQTPQLRLPRIKEVEVNGMTVRVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRFFFMFVF STTLLCIYVFAFSWVYIRRIMSSEDITIWKAMIKTPASIVLIIYTFISMWFVGGLTAFHLYLISTNQTTYENFRYRYDNRANPYYKGVVENFKEIFCSSI PPSKNDFRATVPREPVLPTRSVGGGGFMSPNMGKAVEDIEMGRKTVWSDPGEGQLSSGNERTTVKEGELSGLSPDIRTAVAEEAGERSGGVHPRRSSWGR KSGSWEMSPEVLALAARVGESNRMGGSSSSGGLMTENRLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26935			DHHC-type zinc finger family p...		Lus10035177 [exp]	0	1
AT3G26935			DHHC-type zinc finger family p...		Lus10032009 [exp]	1.0	0.9015
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10034753 [exp]	1.4	0.8640
AT3G18050			unknown protein		Lus10027253 [exp]	3.2	0.8457
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10004944 [exp]	4.2	0.8196
AT4G33625			unknown protein		Lus10007070 [exp]	4.5	0.8474
AT4G11050		ATGH9C3	glycosyl hydrolase 9C3 (.1)		Lus10033956 [exp]	4.9	0.8499
AT5G24170			Got1/Sft2-like vescicle transp...		Lus10019023 [exp]	6.7	0.8047
AT5G67070		RALFL34	ralf-like 34 (.1)		Lus10003931 [exp]	8.7	0.7902
AT4G28760			Protein of unknown function (D...		Lus10022842 [exp]	10.5	0.7934
AT3G08030			Protein of unknown function, D...		Lus10029501 [exp]	10.6	0.8319

Compare expression of checked genes

Lus10035177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.