Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13160 388 / 5e-132 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G02800 378 / 3e-129 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT1G07870 375 / 2e-127 Protein kinase superfamily protein (.1.2) AT5G18610 373 / 2e-125 Protein kinase superfamily protein (.1.2) AT3G24790 368 / 2e-125 Protein kinase superfamily protein (.1) AT1G20650 365 / 4e-124 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT2G28590 364 / 4e-123 Protein kinase superfamily protein (.1) AT3G26940 360 / 1e-121 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT3G20530 358 / 2e-121 Protein kinase superfamily protein (.1) AT1G76370 353 / 4e-119 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032010 [exp] 797 / 0 AT5G13160 399 / 4e-136 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10015756 [exp] 380 / 6e-129 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10040350 [exp] 378 / 8e-129 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 378 / 1e-128 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 377 / 1e-128 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 380 / 3e-128 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 380 / 4e-128 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019897 [exp] 367 / 8e-125 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10036499 [exp] 367 / 1e-124 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G067900 [exp] 429 / 1e-148 AT5G13160 434 / 3e-150 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 384 / 1e-129 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G060800 [exp] 382 / 1e-129 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 376 / 1e-128 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G252000 [exp] 375 / 8e-128 AT1G20650 531 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.008G046500 [exp] 372 / 8e-127 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 375 / 1e-126 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 376 / 2e-126 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.009G026500 [exp] 369 / 3e-125 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G234100 [exp] 369 / 3e-125 AT1G07870 590 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10035178 pacid=23162358 polypeptide=Lus10035178 locus=Lus10035178.g ID=Lus10035178.BGIv1.0 annot-version=v1.0 ATGGGGTTTTATCCTCCTTGTCACGCTCTCGTCAAGATTTTCAGAAGAAAATTTAGAATCATGGCCAAATCCAAGATCGATGATGACCCTCATGGTACTA CTGGTAATACAGATCAACAACCCTCCCCTGCTCCAGGAGTTGGCCAAGGACTTATAGCAGGCCTTAACATGGCTCCGACGTTCATTTACCAAGAGCTCGA AGCCGCCACGAATGGGTTCGCTCCCGATGCGTATCTCGGAAGAGGTGGTTTCGGAGCGGTCTACAAGGGCAAAATCAAGAGAATAGGCCAGTTAGTGGCA GTGAAACAACTGGATTCATCTGGGTTTCAAGGGGAAAAGGAGTTCATTGTGGAGGTCATGATGCTTTCTCTGCTGCACCATCCTAACCTCGTCAAGTTGA TCGGTTACTGTGCCGAAGGGACGCAACGTCTTCTTGTCTATGAATACATGCCTTTGGGTTCTTTGGAAGATCGTCTCTTTGATCTGTCAAATGGGATACA ACCTATGAACTGGAAAACGAGGATAAAGATAGCTGCTGGTACAGCGAAAGGGCTGGAGTGCCTGCACTCTGCAACTCCTTCAGTCATATACAGAGACCTC AAAGCTTCCAACATATTGTTAGACAAGGATTACCAGCCTAAGCTCTCGGATTTCGGGCTGGCCAAATTCGGTCCGGTTGGGGATAGCTCTCATGTTTCGA CTAGGGTCATGGGTACTTATGGATATTGTGCACCTGAATATGCTAACACGGGTAGACTCACCATAAAGACTGACATCTACAGTTATGGGGTGCTCTTGTT GGAGCTTATTACAGGCCGTAGGGCAATTGATCATGTGGATAATCGTTCAAGAAACCTTACTCAATGGGCTCTTCCCCTGATGAAAGACAAAGGCAACTGG GTGCAGCTAGCAGATCCGTTGATGAAAGGCCACTACTCCACTTCCGTGTACGACAAGGCAATGGAGGTTGTGTTGAGATGTCTATCCGAGAAACCTAGCT TCCGCCCCACATCAACCGAGTTGGTTGGTGCAATGGATTACCTGCTGGCTCGATCCAGTCATTCCAAGGATGCCAAGCAGGCTGCTGGAGCTGCTGCTGC TGCTAGCACGGGTTTGGCATGGCTCGACACTACTACCACTACTAAGAACAACGATAAGCCTCCTCGTAGCGATCAAAACGAAGCAAAAGCAGCCTCGAAA GCGAACAAAGATCTGAACCGGGAAGTTGAAGTTGAAGAAGCCAAGCTGTGGGGCAGAATTAGTAGGGACAAGAACAACAACAATAAGTCGCCCAAGGTTG AAGCAAGAACTGGTTCAGAAGGCACCAAGTAA
AA sequence Show only first row Show all	>Lus10035178 pacid=23162358 polypeptide=Lus10035178 locus=Lus10035178.g ID=Lus10035178.BGIv1.0 annot-version=v1.0 MGFYPPCHALVKIFRRKFRIMAKSKIDDDPHGTTGNTDQQPSPAPGVGQGLIAGLNMAPTFIYQELEAATNGFAPDAYLGRGGFGAVYKGKIKRIGQLVA VKQLDSSGFQGEKEFIVEVMMLSLLHHPNLVKLIGYCAEGTQRLLVYEYMPLGSLEDRLFDLSNGIQPMNWKTRIKIAAGTAKGLECLHSATPSVIYRDL KASNILLDKDYQPKLSDFGLAKFGPVGDSSHVSTRVMGTYGYCAPEYANTGRLTIKTDIYSYGVLLLELITGRRAIDHVDNRSRNLTQWALPLMKDKGNW VQLADPLMKGHYSTSVYDKAMEVVLRCLSEKPSFRPTSTELVGAMDYLLARSSHSKDAKQAAGAAAAASTGLAWLDTTTTTKNNDKPPRSDQNEAKAASK ANKDLNREVEVEEAKLWGRISRDKNNNNKSPKVEARTGSEGTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10035178 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020332 [exp]	1.0	0.9023
AT2G28830		AtPUB12	PLANT U-BOX 12 (.1)		Lus10023667 [exp]	13.4	0.7509
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10016459 [exp]	22.9	0.8498
AT4G14368			Regulator of chromosome conden...		Lus10027273 [exp]	27.0	0.7668
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10014120 [exp]	27.4	0.8126
					Lus10025954 [exp]	48.1	0.7263
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10035019 [exp]	51.4	0.7167
					Lus10036026 [exp]	63.6	0.6798
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030410 [exp]	93.8	0.6634
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10037995 [exp]	96.9	0.7404

Compare expression of checked genes

Lus10035178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.