Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26950 305 / 2e-98 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032011 [exp] 543 / 0 AT3G26950 575 / 0.0 unknown protein Lus10032012 [exp] 406 / 2e-138 AT3G26950 512 / 3e-178 unknown protein Lus10035181 [exp] 390 / 1e-131 AT3G26950 656 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325500 [exp] 338 / 1e-111 AT3G26950 647 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035179 pacid=23162480 polypeptide=Lus10035179 locus=Lus10035179.g ID=Lus10035179.BGIv1.0 annot-version=v1.0 ATGAGAGATGCTGCTTCGGATTTGTTTGGACATCCTGAAGAGCTTCGATTTCGGCCTAATGTATTCGGCGAGCTGATGAAGTTTCTTGTATCTCCATCGG AAGAAGTTCAGGAGGCAGTTGAGATGGTGCTTGACGGCGGCCCTGATCCTGACATTTCGTTGCACATGCGTATGATGAACAACAGGCCGGCGGGAGCAGT GAAGCCAACAGTAAACTGTATGAAAAAAGCCATGCAAATTTTACAACGTAAGCAGCAGAAGAGACCCAGAGTGGTTTTGGTGTCGGATACACCGTCTTTT ATGAAAATCCTTGTTCCGGAGATAAGTCGATTCGCAAAGGTTCTTCAGTTCGATTATAACAAGTTTGGAAGAAACATCCCTCGTGATGGGAAACCATTAT TGCACGCTATGGACTCAAAAGCCAAAGATTGGGGTCCAGCACCAAGATGGGTTGCATTCGTGGATTTCTTCCTAGCAGCACGAGCCAAGCACGCCGTCAT ATCTGGCGCAAACAGCCGGGTCGGAACTCCCTACGCTCAGCTGATTGCAGCACTCGCAGCACCTAACCAACTGGGTGTGAACCAAACGGATCCAAGGTTT TCATTCATGAGCAGTTTCCAGAGCAATGTGTTGAGGAAAGGGTTGAGTGTGCAGAGCGGGTGGGGACATGTATGGAGCAGGTTTGCAGGTCCTTTGAGCT GTGAAAACCAGTCCGACCAATGTGCTTTCACTCCTCTTTCTGCACCTGCTTGGTGGGACGGTCCCTGGCAATCCCTTGTACAATCGGACATCAAGAGACT GTCCATGTATGGCGTCCGTCTCTCTGTCGATGGAACTGTCGATGGAGACGAACTCGAGACCTATTGTGCTTCGAGGAATGCCACCCTCGACAAATCAAAA ACTAAAAATCTAACATCACTACCATGCCTCAATAATAACCCCAACTCCCCCAATTCCACTGTCTACAAATCCACAGCACCCAACACCGTCACCAAATCTG CATCACCTCCAACTGCACACATAATTGCACCATCGAAAACGAATGTCATCACCTCTGGACCGGACAAGCTCTATGAGGCGGCAACGAAGAAGACCTGTTC GCCAGCACCACATCGACTTGGGAAGACCTGGAAGGATAATTCGCTAACGGCCACAATCGAATCAACTCTTACCCCAACCGTTAAGGCGTTGCCCTCATTG GTGGAGGAACAGGATGACCAACAAGCGGGTCAGATGACCCTATCTCACCCACCACCGTAA
AA sequence Show only first row Show all	>Lus10035179 pacid=23162480 polypeptide=Lus10035179 locus=Lus10035179.g ID=Lus10035179.BGIv1.0 annot-version=v1.0 MRDAASDLFGHPEELRFRPNVFGELMKFLVSPSEEVQEAVEMVLDGGPDPDISLHMRMMNNRPAGAVKPTVNCMKKAMQILQRKQQKRPRVVLVSDTPSF MKILVPEISRFAKVLQFDYNKFGRNIPRDGKPLLHAMDSKAKDWGPAPRWVAFVDFFLAARAKHAVISGANSRVGTPYAQLIAALAAPNQLGVNQTDPRF SFMSSFQSNVLRKGLSVQSGWGHVWSRFAGPLSCENQSDQCAFTPLSAPAWWDGPWQSLVQSDIKRLSMYGVRLSVDGTVDGDELETYCASRNATLDKSK TKNLTSLPCLNNNPNSPNSTVYKSTAPNTVTKSASPPTAHIIAPSKTNVITSGPDKLYEAATKKTCSPAPHRLGKTWKDNSLTATIESTLTPTVKALPSL VEEQDDQQAGQMTLSHPPP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26950			unknown protein		Lus10035179 [exp]	0	1
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Lus10025919 [exp]	6.0	1.0000
					Lus10003843 [exp]	6.2	1.0000
					Lus10001326 [exp]	6.2	1.0000
					Lus10014857 [exp]	12.0	1.0000
					Lus10026755 [exp]	12.5	1.0000
AT2G19110		ATHMA4, HMA4	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10006956 [exp]	13.2	1.0000
AT4G17260			Lactate/malate dehydrogenase f...		Lus10028931 [exp]	14.5	1.0000
					Lus10043174 [exp]	16.6	1.0000
AT5G13620			unknown protein		Lus10017168 [exp]	17.0	1.0000
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008511 [exp]	17.7	1.0000

Compare expression of checked genes

Lus10035179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.