Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26950 607 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032012 [exp] 790 / 0 AT3G26950 512 / 3e-178 unknown protein Lus10032011 [exp] 692 / 0 AT3G26950 575 / 0.0 unknown protein Lus10035179 [exp] 384 / 6e-129 AT3G26950 304 / 2e-98 unknown protein Lus10035180 [exp] 132 / 2e-36 AT3G26950 96 / 6e-24 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325500 [exp] 680 / 0 AT3G26950 647 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035181 pacid=23162405 polypeptide=Lus10035181 locus=Lus10035181.g ID=Lus10035181.BGIv1.0 annot-version=v1.0 ATGAAGTACCACCACAACGGGTTCCGAAGAAGAAGGGTAGTGTCCTTACGTTCATTCCTCGTCGCCGTTGTACTCTTCACCGGGACCGGCTTGTTTCTCC TCACACTGAGATCTGTTGATCCTCCTCCTCTGGACATCCCTGGATTTCTCCCTAACCCCGACGCAGGTGGGGGAGGAGGAGACCAGACGCCAGGTTCCAG TGATTCTAACTCGCTGAAAAGTGATGCGATTAAGATTGATCAGTATGCCGGCAATGTGACGAGAGAGGAATCGGCGAAGAAGTCATGCGCAACGGTTGAG GAAATGGGAGAGAGCTTCCAGGATGAGCCGTGGAAGGATAGCCTGAGAGTTAGGGAGATCATTCGACACCACTTTCTCGTCAACGGTGCTTCAAGAGTGA GGGATCTCCCTCCAGAGGAATTCTGTAGACATGGTTATGTGCTGGGGAAATCATCAGAAGCAGGATTTGGGAATGAGATGTACAAGATCTTAAATGGTGC AGCGTTGAGTATACTATTGAACCGGGATAAATATCCATTTGGGGACTATATAGCCTATTCCAACCAATCGTTTACACTGGGTGAAGTCAAGCATCTATGG AGGAAAAATGGATGTCTAAAGAAATATGGAAAACACTTGGTTATAAGGATTGATGACTTTCTGAAGCCTACTAAAACAAACGTCTTGTGCAGCAATTGGA GGAAGTGGGAGCAACCAATCATATGGTTTCAAAATACAACCGATGCAATGGCCAGTCAGTTTTTCTTAAAAAGCATTCACCCTGAGATGAGAACCGTTGC AGCCGATTTATTTGGACAGCCAGAACAACTTCAAACTCGACCTAATGTTTTTGGCGAGTTGATGGCATTTCTCATATCTCCATCGGAAGAGGTTAAGGAG GCAGTTGACATGGTGCTTGCTGGTGGGCCGGATCCTGATATCTCCTTGCACATGCGAATGCTTATGAACAGGCCCGTGAAAGCTGTGCAGGCAGCATTGA ACTGTATCAGAAAAGCCATGCAAAACGCGCAAAATAAGCAAAGACCCAGGCTGGTTATAGTATCGGATACACCATCTTTTGTGAAAAGCCTTGTTCCCAA TATAACTGGATTTGCAGAGGTGCTTCATTTCGATTATAAGAAGTTCCAAGGGAACATCCCTCGCGATGGCAAGACACTGCAGAATCTCGAATTTAGAGCC AAGGACTGGGGTCCTGCACCAAGATGGGTTGCATTTGTGGATTTCTTCCTAGCAGCACGCGCCAAGCATGCCGTCATATCAGGGGCACACAAACGTGTTG GAACGACCTATGCTCAGCTGGTTGCAGCCCTTGCAGCAGCCAACCAACTCGCGGCGAATCAAACGCAGCCTAGCTTTTCATTCCTGAGCAGTTTCCACAG CAATCTATTGAGAGACGGATTGAGGGTGCAGAATGGGTGGGGCCATGTTTGGAATAGGTTTGCAGGTCCATTGAGCTGTGGTAACCAGCCGAATCAATGT GCTTTCACGCCTCTTTCTCCCCCAGCTTGGTGGGATGGTCTGTGGCAATCTCCTATTTCAAGGGACGTTCAGAAGCTGTCCATGTTTGGCGTCACCCTCT CTGGTTTGGGCACAGTGGATGAAAACGAACTCAAGTCCTACTGTGCTTCAAAGAAAACCACTGTGAGAACAGTTGTGCTTATATAG
AA sequence Show only first row Show all	>Lus10035181 pacid=23162405 polypeptide=Lus10035181 locus=Lus10035181.g ID=Lus10035181.BGIv1.0 annot-version=v1.0 MKYHHNGFRRRRVVSLRSFLVAVVLFTGTGLFLLTLRSVDPPPLDIPGFLPNPDAGGGGGDQTPGSSDSNSLKSDAIKIDQYAGNVTREESAKKSCATVE EMGESFQDEPWKDSLRVREIIRHHFLVNGASRVRDLPPEEFCRHGYVLGKSSEAGFGNEMYKILNGAALSILLNRDKYPFGDYIAYSNQSFTLGEVKHLW RKNGCLKKYGKHLVIRIDDFLKPTKTNVLCSNWRKWEQPIIWFQNTTDAMASQFFLKSIHPEMRTVAADLFGQPEQLQTRPNVFGELMAFLISPSEEVKE AVDMVLAGGPDPDISLHMRMLMNRPVKAVQAALNCIRKAMQNAQNKQRPRLVIVSDTPSFVKSLVPNITGFAEVLHFDYKKFQGNIPRDGKTLQNLEFRA KDWGPAPRWVAFVDFFLAARAKHAVISGAHKRVGTTYAQLVAALAAANQLAANQTQPSFSFLSSFHSNLLRDGLRVQNGWGHVWNRFAGPLSCGNQPNQC AFTPLSPPAWWDGLWQSPISRDVQKLSMFGVTLSGLGTVDENELKSYCASKKTTVRTVVLI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26950			unknown protein		Lus10035181 [exp]	0	1
AT2G37050			Leucine-rich repeat protein ki...		Lus10019907 [exp]	3.2	0.7912
AT2G07680		ATMRP11, ABCC13	ATP-binding cassette C13, mult...		Lus10041661 [exp]	5.8	0.7449
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Lus10042451 [exp]	6.0	0.7203
AT5G46070			Guanylate-binding family prote...		Lus10018638 [exp]	18.2	0.7086
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Lus10001799 [exp]	21.9	0.6803
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10033838 [exp]	24.2	0.7231
					Lus10008258 [exp]	26.0	0.6086
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10032078 [exp]	31.5	0.6564
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10042478 [exp]	32.4	0.7033
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10020750 [exp]	34.7	0.6914

Compare expression of checked genes

Lus10035181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.