Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26990 449 / 6e-154 ENTH/VHS family protein (.1) AT5G10060 241 / 1e-73 ENTH/VHS family protein (.1) AT5G65180 238 / 7e-73 ENTH/VHS family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032013 [exp] 825 / 0 AT3G26990 421 / 3e-143 ENTH/VHS family protein (.1) Lus10020327 [exp] 245 / 2e-74 AT3G26990 297 / 4e-94 ENTH/VHS family protein (.1) Lus10005665 [exp] 244 / 7e-74 AT3G26990 301 / 1e-95 ENTH/VHS family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325700 [exp] 574 / 0 AT3G26990 467 / 8e-161 ENTH/VHS family protein (.1) Potri.007G086700 [exp] 257 / 3e-79 AT5G65180 438 / 9e-151 ENTH/VHS family protein (.1.2) Potri.005G080600 [exp] 234 / 1e-70 AT5G65180 360 / 2e-120 ENTH/VHS family protein (.1.2) Potri.005G080800 [exp] 211 / 1e-61 AT5G65180 357 / 5e-119 ENTH/VHS family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04818 [flax] [poplar] CID CID domain
Representative CDS sequence Show only first row Show all	>Lus10035182 pacid=23162483 polypeptide=Lus10035182 locus=Lus10035182.g ID=Lus10035182.BGIv1.0 annot-version=v1.0 ATGGGCAGCTCATTCAATCCTCAGATCTTGGTGGAGAAGCTCACCAAGCTCAATAATTCACAAGCAAGCATAGAGACTTTATCACATTGGTGTATATTTC ATATGCATAAAGCCAAGCATGTTGTTGAAACATGGGCCAGACAGTTCCATTCTTCTCCACGTGAGCAAAGATTAGCTTTCCTTTATCTCGCTAATGATAT ACTACAAAATAGTCGTCGAAAAGGGTCGGAGTTTGTTGGTGAATTCTGGAAAGTTCTCCCAGAAGCTCTTCGCGATGTTATTGATCATGGCGATGAGTTT GGGCGAAATTCTGCAATGCGATTGATTGGCATATGGGAAGACAGAAAAGTTTTTGGTTCTAGGGGACAAGTTTTGAAGGAAGAGCTACTTGGGAGGCAGT TGGAAAATAGTCGTAGGAATGGAAAGAATTTAGATACAAGCTCTAAACTGAGGCACCCCATTGGAAGTACGGTGGACAAGATAGTTTCTGGTTACCATGT TGTTTACAGTGGAAAGGATGAAGATGCCATACTGGGAAAGTGTAGCAGTTCTATCTCTTTTTTTGAGAAAGTAGATAAGGAAGTTCGTGACAATAACTCA GGTCAAGTACATGGACCTGCATTTGTGGAGGAGGTGCAGGGGCAGTATGTTGCTCTGAGGGATAGCATTGAGCAATTGGTGGCCATTGAATCATCAAAAG CAAGTCTTGTCTCTCATCTTACAGAGGCTCTTCAAGAGCAGGAAACGAAACTGCAACATATTAGGCATCAACTTCAGGTAGCACGTTCCCAATCAGAAAC TGTAGATAATCTATGCCAGCGGCTGGTCCAAGCCAGCAACCCCCAGTCAGTGACCGATCAAAACTCAAAGGAGGCTAGTAACTCTGTTGCATCTCAAGGC TTTGTTTCTGGGGATGGGGAACAAACTGCTCCACCAATGTACGCAAGGCAGGTCTCCTTTACTCCTGAGAATCATCCCAACCACATTGAGGAAGATCCTC GAAAATCTGCCGCAGCTGCTATTGCTGCAAAACTAACTGCATCTTCATCATCCGCTCAGATGCTTTCTTACGTACTTTCCTCCCTTGCATCTGAAGGTGT CATCGGCAACAAGCCAGCGAACGAAGCCTCCTCCAATGACTACCCTCCTGAGAAGAGGGCTAGGCTCGAAAACCAAAACGAACCTTACATACCGACCGGT CAGAATTCTCAACAACCACAGCCACCTTACCAGCCTTCTGAGTCATCAATCGATCCTCCTCCTCTACCTTCGTCTCCTCCGCCAATGGCACCCTTACCAC CTCCTTATTCAATGCCTCCCTATGTACCGACAGCTGGACCGATGAATGGTGTGCCATATGGATATGGCGTGGCTCAGCAACTTCAGCCTCCTCTGCAGGG ATTCTCACAAGTTGGCACTTCCATGACTGGTATTCCTCCTTTTGGAATTTCTCAGACGAATTCATACCAAAGCTATCAGAGTTCTGAAGGTAACCAATAC ACGCAGCAACCGTCATCGATGCCGATGGCACCGATGTCCCGGCAGTAG
AA sequence Show only first row Show all	>Lus10035182 pacid=23162483 polypeptide=Lus10035182 locus=Lus10035182.g ID=Lus10035182.BGIv1.0 annot-version=v1.0 MGSSFNPQILVEKLTKLNNSQASIETLSHWCIFHMHKAKHVVETWARQFHSSPREQRLAFLYLANDILQNSRRKGSEFVGEFWKVLPEALRDVIDHGDEF GRNSAMRLIGIWEDRKVFGSRGQVLKEELLGRQLENSRRNGKNLDTSSKLRHPIGSTVDKIVSGYHVVYSGKDEDAILGKCSSSISFFEKVDKEVRDNNS GQVHGPAFVEEVQGQYVALRDSIEQLVAIESSKASLVSHLTEALQEQETKLQHIRHQLQVARSQSETVDNLCQRLVQASNPQSVTDQNSKEASNSVASQG FVSGDGEQTAPPMYARQVSFTPENHPNHIEEDPRKSAAAAIAAKLTASSSSAQMLSYVLSSLASEGVIGNKPANEASSNDYPPEKRARLENQNEPYIPTG QNSQQPQPPYQPSESSIDPPPLPSSPPPMAPLPPPYSMPPYVPTAGPMNGVPYGYGVAQQLQPPLQGFSQVGTSMTGIPPFGISQTNSYQSYQSSEGNQY TQQPSSMPMAPMSRQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26990			ENTH/VHS family protein (.1)		Lus10035182 [exp]	0	1
AT3G26990			ENTH/VHS family protein (.1)		Lus10032013 [exp]	1.4	0.8617
AT2G25970			KH domain-containing protein (...		Lus10013531 [exp]	8.9	0.8664
AT1G55150			DEA(D/H)-box RNA helicase fami...		Lus10037646 [exp]	9.5	0.8404
AT5G41920	GRAS		GRAS family transcription fact...		Lus10010462 [exp]	14.3	0.8420
AT5G57950			26S proteasome regulatory subu...		Lus10036267 [exp]	17.9	0.8073
AT2G25970			KH domain-containing protein (...		Lus10023854 [exp]	19.7	0.8579
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10019235 [exp]	19.7	0.8507
AT2G30620			winged-helix DNA-binding trans...		Lus10005535 [exp]	20.4	0.8361
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10002823 [exp]	23.8	0.8557
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10014971 [exp]	26.7	0.8489

Compare expression of checked genes

Lus10035182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.