Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14070 146 / 4e-46 ROXY2 Thioredoxin superfamily protein (.1) AT3G02000 127 / 9e-39 ROXY1 Thioredoxin superfamily protein (.1) AT4G15690 112 / 4e-33 Thioredoxin superfamily protein (.1) AT4G15700 111 / 8e-33 Thioredoxin superfamily protein (.1) AT4G15680 109 / 4e-32 Thioredoxin superfamily protein (.1) AT4G15660 109 / 4e-32 Thioredoxin superfamily protein (.1) AT4G15670 109 / 5e-32 Thioredoxin superfamily protein (.1) AT3G21460 108 / 1e-31 Glutaredoxin family protein (.1) AT3G62950 108 / 1e-31 Thioredoxin superfamily protein (.1) AT5G18600 104 / 6e-30 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011333 [exp] 146 / 1e-45 AT5G14070 151 / 1e-47 Thioredoxin superfamily protein (.1) Lus10041538 [exp] 145 / 2e-45 AT5G14070 134 / 3e-41 Thioredoxin superfamily protein (.1) Lus10033965 [exp] 114 / 9e-34 AT5G18600 148 / 5e-48 Thioredoxin superfamily protein (.1) Lus10023295 [exp] 115 / 1e-33 AT5G14070 123 / 5e-37 Thioredoxin superfamily protein (.1) Lus10013962 [exp] 113 / 2e-33 AT1G28480 135 / 3e-42 Thioredoxin superfamily protein (.1) Lus10002887 [exp] 112 / 6e-33 AT4G15690 149 / 3e-48 Thioredoxin superfamily protein (.1) Lus10012815 [exp] 111 / 2e-32 AT3G21460 171 / 3e-57 Glutaredoxin family protein (.1) Lus10038514 [exp] 111 / 4e-32 AT5G14070 122 / 2e-36 Thioredoxin superfamily protein (.1) Lus10040899 [exp] 104 / 4e-30 AT2G30540 140 / 5e-45 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325800 [exp] 171 / 5e-56 AT3G02000 155 / 6e-50 Thioredoxin superfamily protein (.1) Potri.001G060600 [exp] 166 / 5e-54 AT5G14070 147 / 1e-46 Thioredoxin superfamily protein (.1) Potri.003G167000 [exp] 162 / 2e-52 AT5G14070 150 / 9e-48 Thioredoxin superfamily protein (.1) Potri.008G214500 [exp] 119 / 5e-36 AT3G21460 177 / 2e-59 Glutaredoxin family protein (.1) Potri.008G214600 [exp] 106 / 7e-31 AT5G18600 159 / 2e-52 Thioredoxin superfamily protein (.1) Potri.010G021800 [exp] 105 / 2e-30 AT5G18600 163 / 5e-54 Thioredoxin superfamily protein (.1) Potri.008G214800 [exp] 104 / 5e-30 AT5G18600 157 / 2e-51 Thioredoxin superfamily protein (.1) Potri.014G134000 [exp] 102 / 5e-29 AT3G62930 158 / 8e-52 Thioredoxin superfamily protein (.1) Potri.004G049800 [exp] 102 / 1e-28 AT1G28480 94 / 2e-25 Thioredoxin superfamily protein (.1) Potri.002G208400 [exp] 100 / 2e-28 AT2G30540 160 / 8e-53 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10035183 pacid=23162384 polypeptide=Lus10035183 locus=Lus10035183.g ID=Lus10035183.BGIv1.0 annot-version=v1.0 ATGTACCAAACAGATTCATCATGGAACTGCATTAGTTCAGCTGGAGGCAGAGGACCAAGACTCGGTGCAAGCGGTGGCGGCGGAGGGGACCGGGCGGCGG CTCGCATACACCAGCTGGCGGCGGGGAACGCGGTGGTGATATTCAGCATAAGCAGCTGCTGCATGTGCCACGTCATCAAGCGGCTGTTCTCCGGCATGGG AGTCAACCCGACGGTGTACGAGCTCGACGACGATCCCATTGCCGGAAAGGAGATAGAGATGGCTCTGATGCGACTGCTGGGAACTTCGTCGGCGGTGGTC CCCGTCGTCTTCATCGGAGGTAAGCTGGTGGGAGCAATGGAAAGAGTGATGGCGTCTCACATTAACGGCACGCTGGTTCCGTTACTCAAAGAAGCCGGCG CTCTCTGGCTCTAG
AA sequence Show only first row Show all	>Lus10035183 pacid=23162384 polypeptide=Lus10035183 locus=Lus10035183.g ID=Lus10035183.BGIv1.0 annot-version=v1.0 MYQTDSSWNCISSAGGRGPRLGASGGGGGDRAAARIHQLAAGNAVVIFSISSCCMCHVIKRLFSGMGVNPTVYELDDDPIAGKEIEMALMRLLGTSSAVV PVVFIGGKLVGAMERVMASHINGTLVPLLKEAGALWL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10035183 [exp]	0	1
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033951 [exp]	4.0	0.9164
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019870 [exp]	11.4	0.9015
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10002538 [exp]	16.6	0.8784
AT2G20515			unknown protein		Lus10022928 [exp]	17.0	0.9021
AT1G14900		HMGA	high mobility group A (.1)		Lus10004056 [exp]	19.5	0.8955
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014381 [exp]	20.2	0.8884
AT1G14900		HMGA	high mobility group A (.1)		Lus10002284 [exp]	26.7	0.8938
AT1G80100		AHP6	histidine phosphotransfer prot...		Lus10011487 [exp]	28.1	0.7903
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009579 [exp]	29.4	0.8717
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10040853 [exp]	30.7	0.8943

Compare expression of checked genes

Lus10035183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.