Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39190 265 / 2e-90 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39160 264 / 4e-90 RmlC-like cupins superfamily protein (.1.2.3) AT5G39130 264 / 5e-90 RmlC-like cupins superfamily protein (.1) AT3G05950 259 / 4e-88 RmlC-like cupins superfamily protein (.1) AT5G39120 256 / 6e-87 RmlC-like cupins superfamily protein (.1) AT5G39150 255 / 1e-86 RmlC-like cupins superfamily protein (.1) AT5G39180 254 / 4e-86 RmlC-like cupins superfamily protein (.1) AT5G39110 252 / 2e-85 RmlC-like cupins superfamily protein (.1) AT4G14630 248 / 1e-83 GLP9 germin-like protein 9 (.1) AT5G38910 244 / 2e-82 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032016 [exp] 422 / 8e-153 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10032015 [exp] 421 / 3e-152 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 421 / 5e-152 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10032017 [exp] 375 / 2e-132 AT3G05950 252 / 5e-84 RmlC-like cupins superfamily protein (.1) Lus10030047 [exp] 352 / 4e-125 AT3G05950 256 / 7e-87 RmlC-like cupins superfamily protein (.1) Lus10035280 [exp] 352 / 1e-124 AT3G05950 252 / 2e-85 RmlC-like cupins superfamily protein (.1) Lus10034254 [exp] 335 / 4e-118 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10035278 [exp] 332 / 4e-117 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10030048 [exp] 331 / 1e-116 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163800 [exp] 333 / 2e-117 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163200 [exp] 331 / 1e-116 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 331 / 1e-116 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163216 [exp] 317 / 4e-111 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 317 / 5e-111 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.001G465100 [exp] 305 / 3e-106 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G162200 [exp] 293 / 7e-102 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464100 [exp] 286 / 6e-99 AT5G39190 231 / 3e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464000 [exp] 285 / 2e-98 AT5G39190 231 / 4e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.019G026400 [exp] 267 / 2e-91 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10035185 pacid=23162500 polypeptide=Lus10035185 locus=Lus10035185.g ID=Lus10035185.BGIv1.0 annot-version=v1.0 ATGGCATATCTGGCTGCTTTCTTCACCTTGGTGACTTTTGCTGTTTGTGCAAGTCTCACCTTTGCCATGGATCCTGCCAATCTCCAGGACTTCTGTGTGG CCGATCCCAACGCCGACATAAGGCTTAACGGTGTGGCCTGCAAGAACCCTGCAGCCGTCCAAGCTAGCGATTTTTCGTTTAGCGGACTCCACATCCCTGG CAATACATCAAATGCGGTGGGCTCGAGGGTCACCACTGTTTCTGTGACTCAGATTCCCGGATTGAACACTCTTGGGATTTCATTGGTTCGTGTTGACTAT GCTCCATGGGGTATTAACCCTCCCCACACTCATCCTCGTGCCACCGAGATTCTCACGGTCATTGAAGGGTCTCTTGAGGTCGGATTCATCACATCCAACC CCGAAAATCGTCTCATCTCTAAGATCATTCATAAAGGCGATGTGTTTGTCTTCCCTATTGGGTTGATTCACTTCCAACGTAATGTTGGGTACGGAAATGC GGTAGCCATTGCTGGATTGAGCAGCCAAAACCCCGGAGTCATCACCATTGCTAACTCTGTCTTCGGATCGAAGCCTGATATCTCTAGCGACATCCTTGCC AAGGCTTTCCAAGTTGACAAACGTGTTGTGAAGCAGCTCCAAACTAAGTTCTAG
AA sequence Show only first row Show all	>Lus10035185 pacid=23162500 polypeptide=Lus10035185 locus=Lus10035185.g ID=Lus10035185.BGIv1.0 annot-version=v1.0 MAYLAAFFTLVTFAVCASLTFAMDPANLQDFCVADPNADIRLNGVACKNPAAVQASDFSFSGLHIPGNTSNAVGSRVTTVSVTQIPGLNTLGISLVRVDY APWGINPPHTHPRATEILTVIEGSLEVGFITSNPENRLISKIIHKGDVFVFPIGLIHFQRNVGYGNAVAIAGLSSQNPGVITIANSVFGSKPDISSDILA KAFQVDKRVVKQLQTKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39160			RmlC-like cupins superfamily p...		Lus10035185 [exp]	0	1
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Lus10035186 [exp]	1.7	0.9571
AT5G65380			MATE efflux family protein (.1...		Lus10012741 [exp]	3.7	0.9596
AT5G06740			Concanavalin A-like lectin pro...		Lus10021060 [exp]	8.0	0.9360
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034385 [exp]	8.4	0.9531
AT5G01250			alpha 1,4-glycosyltransferase ...		Lus10027770 [exp]	13.3	0.9580
AT5G47550			Cystatin/monellin superfamily ...		Lus10039104 [exp]	15.2	0.9306
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10011310 [exp]	16.2	0.9555
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10032303 [exp]	16.7	0.9454
					Lus10020455 [exp]	21.0	0.9459
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10011829 [exp]	21.3	0.9477

Compare expression of checked genes

Lus10035185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.