Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41040 313 / 3e-105 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 281 / 6e-93 HXXXD-type acyl-transferase family protein (.1) AT3G48720 270 / 2e-88 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G48930 184 / 3e-55 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G27620 150 / 6e-42 HXXXD-type acyl-transferase family protein (.1) AT1G03390 144 / 8e-40 HXXXD-type acyl-transferase family protein (.1) AT5G17540 139 / 9e-38 HXXXD-type acyl-transferase family protein (.1) AT1G65450 134 / 4e-36 HXXXD-type acyl-transferase family protein (.1.2.3) AT2G40230 133 / 7e-36 HXXXD-type acyl-transferase family protein (.1) AT3G03480 129 / 2e-34 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032019 [exp] 559 / 0 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2) Lus10035189 [exp] 528 / 0 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10032020 [exp] 522 / 0 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10025523 [exp] 330 / 6e-112 AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2) Lus10039329 [exp] 323 / 8e-109 AT5G41040 398 / 5e-136 HXXXD-type acyl-transferase family protein (.1.2) Lus10035190 [exp] 309 / 2e-103 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10012552 [exp] 299 / 2e-99 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 291 / 2e-96 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 290 / 4e-96 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326300 [exp] 318 / 5e-107 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 308 / 1e-103 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 294 / 1e-97 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 235 / 1e-74 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G042900 [exp] 193 / 1e-58 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.003G183900 [exp] 189 / 8e-57 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 179 / 4e-53 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 169 / 2e-49 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 159 / 1e-45 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 157 / 9e-45 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10035188 pacid=23162562 polypeptide=Lus10035188 locus=Lus10035188.g ID=Lus10035188.BGIv1.0 annot-version=v1.0 ATGGATTACCCTCCTCTCATGGCTCAGGTGACCAAGTTCAAGTGTGGAGGATTTGTGCTAGGGCTAGCCTTTAGCCATTTCGCCGCGGATGGTATTTCAG CAGTCGATTTTGTCAACTCGTGGGGTGAAACTGCTCGAGGAATCCCGCTATCGTTACCACCATTCCATGACCGGACCTTGCTCAAGGCTTGTACCCCGCT GAAAATTGAACACCACCACTCGGAATACGACTCGTTGCCTGACAAATCATATGAATTGAATGGTACGATACCCCATGAGGAAATGATATACAAGTTTGTT CATTTCAACCTGGAAATGATTGACAAAATCAAGCAGGAAATATCGACGGAGAAAAAATGTTCCACTTTCAAGGCCCTGACTGCATTCGTCTGGAGGGCTC GAACCATAGCGCTCAAGATGGCACGCGACCAACTCACGAGGGTGCTCGTGGTCGTAAACGCTAGGGACAAGTTTGAGCCGTCGTTGCCTAAAGGGTACTT TGGAAATGCGGTAAAGTTCAATCCTGCCACGTGCTTGGCAGGTGAACTTGTGGACGGGCCGTTATCCTATGCGGTCGGGTTGATCGAGGACGCAATCGAT AAGGTAGACGATGGACTCTTGAGATCTACAATCGATTACTACCAATTGACGAAGGCAAACCGCCCGCTAGGGTTTACATGTATTTCGACCTCATGGGGTA GGTTATCATTTGGTTCAACCGATTTTGGATGGGGCGAACCTGTCGCGACCGGTCCGGTGGACTTGCCCGTGAATGAAGCAATGTTCTTCATTCCTCATCA TGAGGACGGGAAGATAAGCATGCATGTCTATATGGGCCTGCCGGTGTCTGCTATGAAGACTTTTCAAGAGTTGGTCCACCAAATTTAG
AA sequence Show only first row Show all	>Lus10035188 pacid=23162562 polypeptide=Lus10035188 locus=Lus10035188.g ID=Lus10035188.BGIv1.0 annot-version=v1.0 MDYPPLMAQVTKFKCGGFVLGLAFSHFAADGISAVDFVNSWGETARGIPLSLPPFHDRTLLKACTPLKIEHHHSEYDSLPDKSYELNGTIPHEEMIYKFV HFNLEMIDKIKQEISTEKKCSTFKALTAFVWRARTIALKMARDQLTRVLVVVNARDKFEPSLPKGYFGNAVKFNPATCLAGELVDGPLSYAVGLIEDAID KVDDGLLRSTIDYYQLTKANRPLGFTCISTSWGRLSFGSTDFGWGEPVATGPVDLPVNEAMFFIPHHEDGKISMHVYMGLPVSAMKTFQELVHQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10035188 [exp]	0	1
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10001927 [exp]	11.4	0.7997
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041681 [exp]	15.8	0.8495
AT1G07750			RmlC-like cupins superfamily p...		Lus10015219 [exp]	20.4	0.8368
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Lus10013651 [exp]	28.7	0.7615
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10018469 [exp]	65.0	0.7459
AT5G47900			Protein of unknown function (D...		Lus10027468 [exp]	70.7	0.7651
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10008512 [exp]	71.6	0.7249
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10024908 [exp]	72.1	0.7139
AT4G38670			Pathogenesis-related thaumatin...		Lus10036435 [exp]	83.4	0.7952
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030871 [exp]	115.1	0.7571

Compare expression of checked genes

Lus10035188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.