Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41040 424 / 4e-146 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 371 / 1e-125 HXXXD-type acyl-transferase family protein (.1) AT3G48720 353 / 7e-119 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G48930 207 / 4e-62 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT5G17540 206 / 3e-61 HXXXD-type acyl-transferase family protein (.1) AT1G27620 204 / 5e-61 HXXXD-type acyl-transferase family protein (.1) AT3G03480 193 / 1e-56 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT2G19070 192 / 3e-56 SHT spermidine hydroxycinnamoyl transferase (.1) AT5G57840 182 / 1e-52 HXXXD-type acyl-transferase family protein (.1) AT1G03390 178 / 6e-51 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032020 [exp] 778 / 0 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 694 / 0 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2) Lus10035188 [exp] 528 / 0 AT5G41040 313 / 3e-105 HXXXD-type acyl-transferase family protein (.1.2) Lus10039329 [exp] 435 / 3e-150 AT5G41040 398 / 5e-136 HXXXD-type acyl-transferase family protein (.1.2) Lus10025523 [exp] 431 / 5e-149 AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2) Lus10035190 [exp] 429 / 5e-148 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10012552 [exp] 428 / 8e-148 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 417 / 1e-143 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 409 / 2e-140 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326300 [exp] 448 / 8e-156 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 427 / 1e-147 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 377 / 1e-128 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 316 / 6e-104 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.018G104700 [exp] 231 / 5e-71 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 225 / 7e-69 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G447300 [exp] 224 / 2e-68 AT5G17540 382 / 2e-129 HXXXD-type acyl-transferase family protein (.1) Potri.018G105500 [exp] 223 / 2e-68 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G447500 [exp] 223 / 1e-67 AT5G17540 380 / 2e-128 HXXXD-type acyl-transferase family protein (.1) Potri.001G447700 [exp] 222 / 2e-67 AT5G17540 383 / 1e-129 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10035189 pacid=23162459 polypeptide=Lus10035189 locus=Lus10035189.g ID=Lus10035189.BGIv1.0 annot-version=v1.0 ATGGTGAGCACTAACGGTAACGAGTCCTCCAAAGTTGCACTTAACGTGAAGGTAGGAGAACCAACTCTGGTACGTCCGGCCGAACCAACAAAAAGAGGAA TCTACTTCCTGTCGAATCTGGACGACGAACCCACAATTGTGCGAACTTTATACTGCTTCAAAAGACGAAACGAGGATGATGCTAATTGCTGTGAAGTGAT GAAGAATGCGCTGAGCAAAGTTCTGGTTCACTACTACCCTCTCGCTGGCCGGATGACGTTCACCGGCGACGGGAGGCGTGCGGTGGATTGCACTGCCGGG GAGGGAGTTGTGTTTGTTGAGGCTGAGGCGGACTGTCAGCTGGATAATATTGATGATATCAAGAAGCTTGACAAAGGGACACGTGGAAAGCTGGTTTATG ATCTTCCACCTGGCGCCAATAATATGATGGATTACCCTCCTCTTATGGCTCAGGTGACCAAGTTCAAGTGTGGAGGATTTGTGCTAGGGCTAGCCTTTAG CCATTTCGCCGCGGATGGTATTTCAGCAGTCGAGTTCGTCAACTCGTGGGGTGAAACTGCTCGAGGAATCCCGCTCTCATTACCACCATTTCATGACCGG ACCTTGCTCAAGGCTCGTACCCCTCTCAAAATCGAACACCGCCACTCGGAATACGACTCGTTGCCTGACAAATCATCCCAATCCAACGGCTCGATCCCGT ATGAGGAAGTGGTCTATGAATTCGTCCACTTCACCCCTGCCATGATTGATAAAATCAAGAAGGAGATATCAACCGAGAAGAAGATGTGTTCCACTTTCAA GGCCCTGACCGCATTCGTCTGGAGGGCTCGAACCATAGCGCTCAAGATGGCATGCGACCAGCCCACAAGGGTGCTCGTGGTCGTGAACGCCAGGGACAAG TTTGAGCCTCCGTTGCCCAAAGGGTATTTTGGGAACGCGATTAAGTTCACGCCTGCCACATGTTTGGCACGTGAACTCGTGGACGAGCCATTGTCCTTTG CGGTTGGGTTGATCCAGGACGCAATTGATAGGGTAGACGATGAACTATTGAGATCTACAATTGATTATTATGAACGGACAAAGGCAGACCGTCCTCTAGG GTTTACATGTATTTCGAGCGCATGGGGTGGGTTAGCATTTGGTTCAACCGATTTTGGGTGGGGCGAACCTGTGGCGACTGGGCCAGTGGAGTTGCCCGTG AATGAAGGAATGTTGTTCATTCCTCAGTATGAAGACGGGAAGATGAGCATGCAGTTTTATATGGGCCTGCCGGTATCTGCTATGAAGACTTTCCAAGAGC TGGTCCAGCAAATTTAG
AA sequence Show only first row Show all	>Lus10035189 pacid=23162459 polypeptide=Lus10035189 locus=Lus10035189.g ID=Lus10035189.BGIv1.0 annot-version=v1.0 MVSTNGNESSKVALNVKVGEPTLVRPAEPTKRGIYFLSNLDDEPTIVRTLYCFKRRNEDDANCCEVMKNALSKVLVHYYPLAGRMTFTGDGRRAVDCTAG EGVVFVEAEADCQLDNIDDIKKLDKGTRGKLVYDLPPGANNMMDYPPLMAQVTKFKCGGFVLGLAFSHFAADGISAVEFVNSWGETARGIPLSLPPFHDR TLLKARTPLKIEHRHSEYDSLPDKSSQSNGSIPYEEVVYEFVHFTPAMIDKIKKEISTEKKMCSTFKALTAFVWRARTIALKMACDQPTRVLVVVNARDK FEPPLPKGYFGNAIKFTPATCLARELVDEPLSFAVGLIQDAIDRVDDELLRSTIDYYERTKADRPLGFTCISSAWGGLAFGSTDFGWGEPVATGPVELPV NEGMLFIPQYEDGKMSMQFYMGLPVSAMKTFQELVQQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10035189 [exp]	0	1
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10032020 [exp]	2.4	0.8169
AT5G47830			unknown protein		Lus10018732 [exp]	6.0	0.8003
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10025200 [exp]	6.6	0.8219
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10012499 [exp]	12.5	0.7931
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10001745 [exp]	14.0	0.7205
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10017431 [exp]	20.4	0.7697
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10015754 [exp]	20.9	0.7613
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10008626 [exp]	21.9	0.7355
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10035190 [exp]	31.4	0.7569
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10022673 [exp]	32.2	0.7564

Compare expression of checked genes

Lus10035189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.