Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41040 418 / 1e-143 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 382 / 1e-129 HXXXD-type acyl-transferase family protein (.1) AT3G48720 365 / 3e-123 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT2G19070 207 / 7e-62 SHT spermidine hydroxycinnamoyl transferase (.1) AT5G48930 203 / 2e-60 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G27620 188 / 1e-54 HXXXD-type acyl-transferase family protein (.1) AT5G17540 184 / 8e-53 HXXXD-type acyl-transferase family protein (.1) AT1G03390 176 / 1e-49 HXXXD-type acyl-transferase family protein (.1) AT3G03480 173 / 8e-49 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G07080 167 / 1e-46 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035189 [exp] 442 / 3e-153 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10012552 [exp] 437 / 5e-151 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032020 [exp] 435 / 1e-148 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 431 / 1e-148 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 417 / 2e-143 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 413 / 9e-142 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10025523 [exp] 401 / 2e-137 AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2) Lus10039329 [exp] 392 / 2e-133 AT5G41040 398 / 5e-136 HXXXD-type acyl-transferase family protein (.1.2) Lus10005439 [exp] 337 / 8e-112 AT5G41040 364 / 2e-122 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326300 [exp] 443 / 2e-153 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 430 / 1e-148 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 385 / 1e-131 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 313 / 1e-102 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.018G105500 [exp] 235 / 1e-72 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 234 / 3e-72 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 222 / 2e-67 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G447700 [exp] 215 / 1e-64 AT5G17540 383 / 1e-129 HXXXD-type acyl-transferase family protein (.1) Potri.001G447500 [exp] 214 / 2e-64 AT5G17540 380 / 2e-128 HXXXD-type acyl-transferase family protein (.1) Potri.005G028100 [exp] 213 / 7e-64 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10035190 pacid=23162606 polypeptide=Lus10035190 locus=Lus10035190.g ID=Lus10035190.BGIv1.0 annot-version=v1.0 ATGGTTGGACAAAAGCACTCCAACAACGGGACACAACAAAACCCAGAAAACACGTTCCAACTCACCGTGAAAAAATGGGACAGCTGCTTGGTTCCGCCGG CGGCAGCAGAAACGTCCGGCGTTTACTTCCTCTCCAACGTTGACGACGACTTGACCATCACGCGGACACTCTACTGCTTCAAGTCCGACGTCAGAGGCAA CGGAGACGCCGGGGAAGTCATCAAAGACGCCCTAGGGAAAGTCCTCGTCCATTACTATCCTCTCGCCGGCCGTATCATCGTCACGCCGGAGGGAAAGTTC GCCGTTAACTGTACCGGAGAAGGTGTCGTCTTCGTCGAGGCTGAGGCCAATTGCGCCTTGGAAGACGTTGACTTCTCTCGCCCGGATAAGGTCACACGCG GGAAGCTTGTGGTTCATGATGTTCCTGGTGTGGACAACAAGTTCGACATCCCTCTGGCTGCTCAGGTGACCAAATTCAGATGTGGAGGATTCATACTGGG AATCTCCTTCAACCACCTACTAGCAGACGGGCAAGCCGCCGTGGAGTTCATAATCTCATGGGCCGAAACAGCCAGAGGAATTTCCCCAATCTCACTCCCG CCATTCCTAGACAGGACGATCCTCAAAGCTAGAACTCCACTCCGAATCCCTTTCCGCCACCCGGAATTCGACTCCATCGAACTCAAATCCGAATCGACCA ACAACAACCAATTCCTCAACCAACCCATGGTCTCCGAGTACATCCACTTCACTCCACAAATGATCCAAACCCTGAAATCCAAAGCATCATCAACACTCGA AAACAGAGCACCCCCTTCCACCTACGAAGCCCTCTCCGCATTCGTGTGGATAGCCCGAACCAAGGCGCTCAAAACTGTGCCGGATCAGCTCACAAAGGTC CTCCTGGTCGCCAACACGAGGAACAAGTTCGACCCGCCCTTACCAAAGGGGTATTTCGGGAATGCGATTAAGTTCACCCCTGCGCTCAGCTTGGCGTCTG AGCTTGTGGGAAACCCGATTTCCCACACGGTTTCCAAGGTTCGAGAGGCGATTAAGATGGTCGGCGACGATGGGTATTTGAGGTCGGCGATTGATTACTA CGAGCTGACCAAGGCCAAGAGGCCGAGAGGGTTTGGGACTACGTTCACGGCGACGAGTTGGTCGAGGTTGGATTTCGAGGCGACCGATTTCGGGTGGGGA GGGGCGGTTCTGACAGAGCCGGTCGAGATTCCGTCGGATGATACGGTGGTTTTCCTAGCTCATCCGACGGAGAAGAGGAGTGTCAATGTGTTTGTTGCTT TGCCGGTTGGGGCCATGGAGGTGTTTAAGGGGTTAGTAGAGGAGGAGCTATGTGGGTAG
AA sequence Show only first row Show all	>Lus10035190 pacid=23162606 polypeptide=Lus10035190 locus=Lus10035190.g ID=Lus10035190.BGIv1.0 annot-version=v1.0 MVGQKHSNNGTQQNPENTFQLTVKKWDSCLVPPAAAETSGVYFLSNVDDDLTITRTLYCFKSDVRGNGDAGEVIKDALGKVLVHYYPLAGRIIVTPEGKF AVNCTGEGVVFVEAEANCALEDVDFSRPDKVTRGKLVVHDVPGVDNKFDIPLAAQVTKFRCGGFILGISFNHLLADGQAAVEFIISWAETARGISPISLP PFLDRTILKARTPLRIPFRHPEFDSIELKSESTNNNQFLNQPMVSEYIHFTPQMIQTLKSKASSTLENRAPPSTYEALSAFVWIARTKALKTVPDQLTKV LLVANTRNKFDPPLPKGYFGNAIKFTPALSLASELVGNPISHTVSKVREAIKMVGDDGYLRSAIDYYELTKAKRPRGFGTTFTATSWSRLDFEATDFGWG GAVLTEPVEIPSDDTVVFLAHPTEKRSVNVFVALPVGAMEVFKGLVEEELCG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10035190 [exp]	0	1
AT4G35150			O-methyltransferase family pro...		Lus10006691 [exp]	2.6	0.8768
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025904 [exp]	3.5	0.8669
AT4G33840			Glycosyl hydrolase family 10 p...		Lus10014642 [exp]	4.7	0.8757
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020353 [exp]	8.7	0.8648
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039506 [exp]	9.2	0.8128
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	10.7	0.8614
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10037792 [exp]	12.5	0.8061
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10014674 [exp]	13.8	0.8433
AT3G60690			SAUR-like auxin-responsive pro...		Lus10015879 [exp]	15.5	0.8585
AT1G68570			Major facilitator superfamily ...		Lus10041466 [exp]	15.6	0.8464

Compare expression of checked genes

Lus10035190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.