Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27430 297 / 2e-82 GYF domain-containing protein (.1) AT1G24300 297 / 4e-82 GYF domain-containing protein (.1.2) AT5G42950 94 / 5e-19 GYF domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032021 [exp] 1511 / 0 AT1G24300 336 / 2e-94 GYF domain-containing protein (.1.2) Lus10003139 [exp] 352 / 2e-100 AT1G27430 742 / 0.0 GYF domain-containing protein (.1) Lus10011331 [exp] 335 / 2e-94 AT1G27430 718 / 0.0 GYF domain-containing protein (.1) Lus10032720 [exp] 141 / 2e-33 AT5G42950 1098 / 0.0 GYF domain-containing protein (.1) Lus10012078 [exp] 137 / 4e-32 AT5G42950 1100 / 0.0 GYF domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G069220 [exp] 616 / 0 AT1G24300 387 / 4e-111 GYF domain-containing protein (.1.2) Potri.001G326500 [exp] 595 / 0 AT1G24300 296 / 3e-81 GYF domain-containing protein (.1.2) Potri.001G326700 [exp] 573 / 2e-178 AT1G24300 300 / 2e-82 GYF domain-containing protein (.1.2) Potri.002G262300 [exp] 87 / 7e-17 AT5G42950 714 / 0.0 GYF domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0673 [flax] [poplar] GYF PF02213 [flax] [poplar] GYF GYF domain
Representative CDS sequence Show only first row Show all	>Lus10035191 pacid=23162527 polypeptide=Lus10035191 locus=Lus10035191.g ID=Lus10035191.BGIv1.0 annot-version=v1.0 ATGGACATGGCTGACCGAAAACCCAATCTGCCCGACGATCTCGTTGTTTCCTCTCACTTTTCCGACGAGGATCGTTCCCCGAACCAAGATCATGCATTCT CAGAAAGTGCCATACCTCTTTCACCACAATGGCTGTACTCTAAACAGCTCGATGCCAAGATAGCAACTGGTGGGGCTTCAGGGGAAACACGTGTGCCAAT TTCTGTTGTTCATGGGAACTCTTCTGATAACAATGCCAAAGACAATTGGCGTTCAGAGGGACCACAAGACAAAAAAGACTGGAGAAGAACTGCTCTGGAT GCTGATAACAACCGTCATTGGCGTGATGAGGAAAGGGATAAAGGTCTACTTGGTAGAAGAGACCGCAAAAAAGAGGAACGGCTTGAGAGCAATAACCGTA CTTCTGGGCATGAATCCAGGAGGGATGGAAAGTGGTCGTCAAGGTGGGGTCCTGAAGATAAGGAGAAGGATTCTCGGTTAGAGAAGAAGACAGACGTTGA AAAGGACGACACTTCCACCGAGAAGCAATTGTTAATCAGCAGCAGTCGTACTGAGAGAGAAAATGAGTCTCGTGATAAATGGAGGCCTCGACATCGCCTG GAATCACATGCTGGTGGATCTGCTACATCCCGTGGTGCACCTGGATTTGGGTCAGACAAGGGACGTGCGGAAGTAGTAAGTGGGCGATTTGGCGCAGGAC GAGGTAGATCTGCAAACAGTGGAAGTTTTCCACAGGGAAAGCATTATTCTGGTAATGTGATTGGGTCCCTCCCACGAGATAAGAAAAATGCTTATTGCTA CCCCAGGGGAAAGCTTCTCGACATTTATCGTCAGCAAAAGCCTCTGAGCTGCAGTGGCATACCTGATGGGATGGAGGATGCATCTCATATAACACAGGAA ATTACTAACAAACCATTGGCTCTTCTTGTACCTGAGGCAAAGGAAGAGGAAGTCCTTGGAGACATATGGGCTGGGAGAATTACAAGCAGTGGAGACATTG AAGATTTGTCTAGAGACAACAATGGTATATCAATTGACTGTGCTGCAGGTTCTGAGGAGGTAATAAGAGAGGGTTTTCACGGCACTTTCAGAAAGCCTGC TCCAGAAAGTCCGTATCGGAACAGTTGTGATGATGTTTCACATCCATCATTTGATTCTGAGAGGGATGTTTCTCTAGAAGGTGAGCAAAAACTTGGAAAC AAAGGGTTTGGTGTGTCAGAGTATAGCTTGGACTCTGATGTCCTGAATCAGGATAAGTCCATTGGAGCACAGGGGACTGGTTCCGGGTTGGGATCCTCTG AATACCTGCTAGTGAAAGATATAGCTTCCCTAAAGCATAACAAGTTGGAAGACTCTGTAACTACTTTTGAAATAGGCAGCCATCTTCCTGATGATTCCAG TACTCTGTTTGATTTTCCTCGCATGCAGCAAAGCGAAGGTAATCAGTCATATATGAATATAAACTACAAGGAAACTCCAATGGGAGATTCTATACCACCA GAAGAGTTATCTTTATTCTATCGAGATCCACAAGGGGCAATTCAAGGACCGTATCTTGGAATTGATATCATGACATGGTTCGAACAAGGCTATTTTGGGA CTGATCTACCGGTTCGTTCATCAGATGCTCCTGATGAAGCACCATTTCATCAGCTTGGTGAAGTGATGCCACATCTAAATGAAATACCTGTGTCTACCTC AAGCACTAGTCTCAATGATATGTCACGACAGTCCGATGCTACTAGAAGCAATTTAGAGGGTCATCTTAACTTCAACAATTTTGACCATAGCAAAGAGCAG CAGTTGACCTCCTCTGGAATTGATGCTATACTGAGTGTCAGTTCACAATCTAAAGTATCAGATTGCAACTTCAATCCTGCGGTACGGCATTCTCTGGAGG AACGCTTTCACAATCCTGATGTTCAGGGTGAAGAAATCCTCTACCCTGTCCGACCTGGTAGCAGCAGTAGCTATACTAGACCTGCCAGTGATGTCAAGAG TTTGAATATTGCTCCTTCTAATCAGCATTCATTTACCAACGAACCTTCTAAGAACAGTTTGCTTAGTCATCGTGATGAAAATTTGCATCCATTTGGTCTG TTGATGTCTGAGCTCAACAGTAACTCTGAGATGAGGAACGTTCAATCATCCAATATGACTTCAAGCATAGGGAGGGACGATCCATATCTTGATCCTATGC TGGAGAGGAATAATGTCTCCATCCATCCAAGTCCTTTTGGTGTGGTTAACCGCCCCGCTTATGAACACTCGTGGGAGAAAGGTTCTAGCATAAATATGCC CCCAAACCCCAGCATTAACTTTGATCCAGGTGATGTTCATCCCTTGTCACATCGGCAACAGGGGCTTAATGAATTTGACATTGAGTTCTTGCAATCACGG AAGTGGGAGAACGAACAGCAAAATCAGTTTTCTCCCCATCCTATGACTCATAATACTGGATTGGGGATTGATCAGATTCCATCACATGTATTGGACATTC AGAGAAAAATGGAGCTTGAACAGCGGCGACGTTTGGAGCTTGAACAGCACCACCTGTTGGAGCTTGAACAACAGCACCTGTTGGAGCTTGAACAGCAGCG ACAGTTGGAGTTTGGGCAACAACAGCGGCTAATAGAGCTTGAACAGCAGCGCCGCCTAGAGCTTGAACAGCAGCGCCGCCTGGAGATTGAACAGCAGCGA AGGCTAGAGATTGAGCAGCAGCGAAGGCTGGAGATTGAACAGCAGCGAAGGCTAGAGATTGAGCAGCAGCGAAGGCTGGAGATTGAACAGCAGCGAAGGC TAGAGATTGAGCAGCAGCGAAGGCTGGAGATTGAACAGCAGCGAAGGCTAGAGATTGAGCAGCAGCGAAGGCTGGAGATTGAACAGCAGCGAAGGCTAGA GATTGAGCAGCAGCGAAGGCTGGAGATTGAACAGCAGCGAAGGCTAGAGATTGAGCAGCAGCGAAGGCTGGAGATTGAACAGCAGCGAAGGCTAGAGATT GAGCAGCAGCGAAGGCTGGAGATTGAACAGCAGCGAAGGCTAGAGATTGAGCAGCAGCGAAGGCTGGAGATTGAACAGCAGCGAAGGCTAGAGATTGAGC AGCAGCGAAGGCTGGAGATTGAACAGCAGCGAAGGCTAGAGATTGAGCAGCAGCGAAGGCTGGAGATTGAACAGCAGCGAAGGCTAGAGATTGAGCAGCA GCGAAGGCTGGAGATTGAACAGCAGCGAAGGCTAGAGCTTGAACAGCAGCAGCGACAGTTGGCGCTTCAACACGCACAACGCCGGCCTNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNAGTATTGAAGATCCTTCCCTCAGAAACACCATGGATGGCAGGTCGATTGGCAAGTCAACACTCGACTATAAAGACTTGA
AA sequence Show only first row Show all	>Lus10035191 pacid=23162527 polypeptide=Lus10035191 locus=Lus10035191.g ID=Lus10035191.BGIv1.0 annot-version=v1.0 MDMADRKPNLPDDLVVSSHFSDEDRSPNQDHAFSESAIPLSPQWLYSKQLDAKIATGGASGETRVPISVVHGNSSDNNAKDNWRSEGPQDKKDWRRTALD ADNNRHWRDEERDKGLLGRRDRKKEERLESNNRTSGHESRRDGKWSSRWGPEDKEKDSRLEKKTDVEKDDTSTEKQLLISSSRTERENESRDKWRPRHRL ESHAGGSATSRGAPGFGSDKGRAEVVSGRFGAGRGRSANSGSFPQGKHYSGNVIGSLPRDKKNAYCYPRGKLLDIYRQQKPLSCSGIPDGMEDASHITQE ITNKPLALLVPEAKEEEVLGDIWAGRITSSGDIEDLSRDNNGISIDCAAGSEEVIREGFHGTFRKPAPESPYRNSCDDVSHPSFDSERDVSLEGEQKLGN KGFGVSEYSLDSDVLNQDKSIGAQGTGSGLGSSEYLLVKDIASLKHNKLEDSVTTFEIGSHLPDDSSTLFDFPRMQQSEGNQSYMNINYKETPMGDSIPP EELSLFYRDPQGAIQGPYLGIDIMTWFEQGYFGTDLPVRSSDAPDEAPFHQLGEVMPHLNEIPVSTSSTSLNDMSRQSDATRSNLEGHLNFNNFDHSKEQ QLTSSGIDAILSVSSQSKVSDCNFNPAVRHSLEERFHNPDVQGEEILYPVRPGSSSSYTRPASDVKSLNIAPSNQHSFTNEPSKNSLLSHRDENLHPFGL LMSELNSNSEMRNVQSSNMTSSIGRDDPYLDPMLERNNVSIHPSPFGVVNRPAYEHSWEKGSSINMPPNPSINFDPGDVHPLSHRQQGLNEFDIEFLQSR KWENEQQNQFSPHPMTHNTGLGIDQIPSHVLDIQRKMELEQRRRLELEQHHLLELEQQHLLELEQQRQLEFGQQQRLIELEQQRRLELEQQRRLEIEQQR RLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEI EQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLEIEQQRRLELEQQQRQLALQHAQRRPXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XVLKILPSETPWMAGRLASQHSTIKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24300			GYF domain-containing protein ...		Lus10035191 [exp]	0	1
AT1G58230			binding (.1)		Lus10028167 [exp]	2.0	0.9788
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009712 [exp]	2.4	0.9765
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017747 [exp]	3.7	0.9634
AT1G48090			calcium-dependent lipid-bindin...		Lus10017108 [exp]	4.5	0.9680
AT1G58230			binding (.1)		Lus10042867 [exp]	4.6	0.9743
AT1G50030		TOR	target of rapamycin (.1.2)		Lus10035661 [exp]	5.3	0.9558
AT3G62900			CW-type Zinc Finger (.1)		Lus10009815 [exp]	6.9	0.9461
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036223 [exp]	8.0	0.9626
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10018619 [exp]	8.1	0.9561
AT5G15680			ARM repeat superfamily protein...		Lus10035142 [exp]	8.1	0.9648

Compare expression of checked genes

Lus10035191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.