Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27430 53 / 2e-08 GYF domain-containing protein (.1) AT1G24300 49 / 6e-07 GYF domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032021 [exp] 238 / 4e-73 AT1G24300 336 / 2e-94 GYF domain-containing protein (.1.2) Lus10003139 [exp] 52 / 5e-08 AT1G27430 742 / 0.0 GYF domain-containing protein (.1) Lus10011331 [exp] 50 / 2e-07 AT1G27430 718 / 0.0 GYF domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326700 [exp] 80 / 8e-18 AT1G24300 300 / 2e-82 GYF domain-containing protein (.1.2) Potri.001G326500 [exp] 80 / 8e-18 AT1G24300 296 / 3e-81 GYF domain-containing protein (.1.2) Potri.017G069220 [exp] 76 / 1e-16 AT1G24300 387 / 4e-111 GYF domain-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035192 pacid=23162350 polypeptide=Lus10035192 locus=Lus10035192.g ID=Lus10035192.BGIv1.0 annot-version=v1.0 ATGAACAGAGTGCCGTCACTTCCCACCAAGGTATCTGACAATGCTCCACCAAAAGTAACACTAGTCTCGCGATCTTTATCGTCTTCCAAGGATGTCTCGT CAAACATTCCCTCTGGTCCAAGCATGAAGCAGAAAAACTCCATCAACATGGCAGCATCTAATGAAAGGAGACACAATCCTGTAGCTGGAAAGGCAATTAC AACAGCGCGGCCAGTGGACGAAATAAAGGTTTCTTCGGCCAAGAAAGATGGGCAGTTTAGAAGAACGTCATCTTACGCAGATGCTGCATCGTCAGATGCA TCATCTTTCATGGAAGTGCTTAAGAAACCAGTTGCCCATGAACCGGATGCAGGAAATGCTAGTAACTTAGAGTCGTTTGAAGCAGGACGAAGCGGGAAGA AGAAGGGGAAAAAGGGGAGGCAGATTGATCCTGCTCTTCTTGGCTTTAAAGTCTCGAGTAACCGGATCATGATGGGTGAAATCCAGCACCCTGATGATTA A
AA sequence Show only first row Show all	>Lus10035192 pacid=23162350 polypeptide=Lus10035192 locus=Lus10035192.g ID=Lus10035192.BGIv1.0 annot-version=v1.0 MNRVPSLPTKVSDNAPPKVTLVSRSLSSSKDVSSNIPSGPSMKQKNSINMAASNERRHNPVAGKAITTARPVDEIKVSSAKKDGQFRRTSSYADAASSDA SSFMEVLKKPVAHEPDAGNASNLESFEAGRSGKKKGKKGRQIDPALLGFKVSSNRIMMGEIQHPDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27430			GYF domain-containing protein ...		Lus10035192 [exp]	0	1
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10041418 [exp]	9.4	0.8986
AT3G52220			unknown protein		Lus10039101 [exp]	14.0	0.8971
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Lus10003321 [exp]	15.8	0.8900
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Lus10011084 [exp]	17.9	0.8787
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	18.3	0.8978
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Lus10011984 [exp]	22.1	0.8511
AT4G39870			TLD-domain containing nucleola...		Lus10041697 [exp]	22.7	0.8938
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	29.8	0.8794
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10017686 [exp]	30.4	0.8780
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10009593 [exp]	31.1	0.8573

Compare expression of checked genes

Lus10035192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.