Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27010 139 / 5e-40 TCP ATTCP20, PCF1, AT-TCP20 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) AT2G45680 97 / 5e-24 TCP TCP9 TCP family transcription factor (.1) AT5G41030 95 / 9e-24 TCP TCP6 TCP family transcription factor (.1) AT1G58100 96 / 2e-23 TCP TCP8 TCP domain protein 8, TCP family transcription factor (.1.2) AT1G72010 96 / 3e-23 TCP TCP22 TCP family transcription factor (.1) AT3G47620 96 / 3e-23 TCP AtTCP14, TCP14 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) AT1G69690 95 / 4e-23 TCP AtTCP15, TCP15 TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15, TCP family transcription factor (.1) AT5G51910 94 / 4e-23 TCP TCP19 TCP family transcription factor (.1.2) AT5G23280 93 / 5e-23 TCP TCP7 TCP family transcription factor (.1) AT5G08330 91 / 2e-22 TCP AtTCP11, CHE, TCP21 TCP domain protein 11, TCP family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032022 [exp] 327 / 1e-113 AT3G27010 234 / 2e-75 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10015760 [exp] 103 / 5e-27 AT3G27010 181 / 1e-55 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10008621 [exp] 102 / 3e-26 AT3G47620 140 / 4e-38 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10037046 [exp] 97 / 5e-26 AT3G27010 145 / 5e-44 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10013814 [exp] 91 / 1e-22 AT3G47620 119 / 2e-32 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10037190 [exp] 94 / 3e-22 AT1G69690 172 / 9e-50 TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15, TCP family transcription factor (.1) Lus10010177 [exp] 91 / 1e-21 AT5G23280 186 / 1e-57 TCP family transcription factor (.1) Lus10008444 [exp] 72 / 1e-16 AT1G58100 104 / 5e-28 TCP domain protein 8, TCP family transcription factor (.1.2) Lus10041328 [exp] 62 / 1e-11 AT3G47620 93 / 3e-22 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G327100 [exp] 169 / 1e-51 AT3G27010 230 / 6e-74 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.017G068748 [exp] 161 / 1e-48 AT3G27010 231 / 3e-74 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.001G060000 [exp] 138 / 5e-40 AT3G27010 215 / 2e-68 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.003G167900 [exp] 128 / 4e-36 AT3G27010 212 / 3e-67 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.014G078500 [exp] 97 / 6e-24 AT2G45680 257 / 1e-83 TCP family transcription factor (.1) Potri.019G081800 [exp] 97 / 9e-24 AT1G72010 220 / 5e-68 TCP family transcription factor (.1) Potri.015G138200 [exp] 96 / 2e-23 AT5G51910 230 / 1e-73 TCP family transcription factor (.1.2) Potri.011G055500 [exp] 96 / 3e-23 AT3G47620 173 / 2e-49 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Potri.013G110700 [exp] 96 / 3e-23 AT1G35560 224 / 9e-70 TCP family transcription factor (.1) Potri.012G135900 [exp] 95 / 3e-23 AT5G51910 219 / 1e-69 TCP family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [flax] [poplar] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Lus10035193 pacid=23162582 polypeptide=Lus10035193 locus=Lus10035193.g ID=Lus10035193.BGIv1.0 annot-version=v1.0 ATGCCAGCTCTTTGCGCTGCCAGAATCTTCCAATTGACCAGAGAATTGGGCCACAAATCCGACGGAGAAACCATCCAGTGGCTTCTCCATCAAGCTGAAC CTTCAATCATTGCTGCAACTGGTACTGGTACTATTCCTGCTTCTGCCCTAGCTTCTACAGGACCTGTGCCCATTTCTTCTGGTACTGGTACTGTTAATTT CCCATCTGGGTTCCATCACAATCCAGTAAAGATTGATGATTTGAGTGGTAGGGCAACTGCTAGTGGAAATTGGGTTGGTGGGGGTGGGTTATGGCCACCT ATGGGTTGTGGGTTTGGTCCGACGGTTGAGAATCCTTCTTCTTACTTGCAGAAAATTGGATTCCCTGCTGGGTTTGATGGTCATATGAGTTTTGCATCGA TTTTAGGTGGGGGAAGTAGTGGTGGTGGTAATAGTCAGCAGTTACCTGGGTTGGAGCTTGGGTTGTCACAGGATGGTCAAATTGGAGTTATGAATCCTCA GGCTTTGAGTCAAATTTATCAGCAGATGGGGCAAGCTAGAGTTAATCTTCAACACCACCCGAGTCAGAATCAGCAGCAGGAAGCTGGGAAAGATGATTCT CCAGAGTCAGGACAGTGA
AA sequence Show only first row Show all	>Lus10035193 pacid=23162582 polypeptide=Lus10035193 locus=Lus10035193.g ID=Lus10035193.BGIv1.0 annot-version=v1.0 MPALCAARIFQLTRELGHKSDGETIQWLLHQAEPSIIAATGTGTIPASALASTGPVPISSGTGTVNFPSGFHHNPVKIDDLSGRATASGNWVGGGGLWPP MGCGFGPTVENPSSYLQKIGFPAGFDGHMSFASILGGGSSGGGNSQQLPGLELGLSQDGQIGVMNPQALSQIYQQMGQARVNLQHHPSQNQQQEAGKDDS PESGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10035193 [exp]	0	1
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10032022 [exp]	1.0	0.9515
AT2G45170		ATATG8E	AUTOPHAGY 8E (.1.2)		Lus10004352 [exp]	2.8	0.9042
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10011301 [exp]	5.5	0.8641
AT1G29800			RING/FYVE/PHD-type zinc finger...		Lus10007320 [exp]	5.9	0.8602
AT4G32250			Protein kinase superfamily pro...		Lus10001499 [exp]	6.3	0.8717
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Lus10041820 [exp]	8.2	0.8339
AT1G70160			unknown protein		Lus10029209 [exp]	8.8	0.8988
AT2G46550			unknown protein		Lus10005973 [exp]	11.0	0.8493
AT1G67910			unknown protein		Lus10026701 [exp]	14.5	0.8243
AT1G03350			BSD domain-containing protein ...		Lus10012761 [exp]	16.5	0.8487

Compare expression of checked genes

Lus10035193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.