Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27020 1122 / 0 YSL6 YELLOW STRIPE like 6 (.1) AT5G41000 1063 / 0 YSL4 YELLOW STRIPE like 4 (.1) AT1G65730 754 / 0 YSL7 YELLOW STRIPE like 7 (.1) AT5G24380 720 / 0 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT4G24120 716 / 0 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT5G53550 716 / 0 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT3G17650 705 / 0 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT1G48370 702 / 0 YSL8 YELLOW STRIPE like 8 (.1) AT5G45450 227 / 5e-70 Oligopeptide transporter OPT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012549 [exp] 1231 / 0 AT3G27020 1154 / 0.0 YELLOW STRIPE like 6 (.1) Lus10032024 [exp] 1219 / 0 AT3G27020 1055 / 0.0 YELLOW STRIPE like 6 (.1) Lus10041544 [exp] 1218 / 0 AT3G27020 1134 / 0.0 YELLOW STRIPE like 6 (.1) Lus10013323 [exp] 760 / 0 AT1G65730 1127 / 0.0 YELLOW STRIPE like 7 (.1) Lus10034177 [exp] 749 / 0 AT1G65730 1115 / 0.0 YELLOW STRIPE like 7 (.1) Lus10043408 [exp] 744 / 0 AT1G65730 1114 / 0.0 YELLOW STRIPE like 7 (.1) Lus10022360 [exp] 735 / 0 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10023240 [exp] 703 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10017406 [exp] 701 / 0 AT1G65730 872 / 0.0 YELLOW STRIPE like 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G327300 [exp] 1142 / 0 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.017G150500 [exp] 784 / 0 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151800 [exp] 771 / 0 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151600 [exp] 771 / 0 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.004G069200 [exp] 765 / 0 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1) Potri.004G069300 [exp] 745 / 0 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.011G055224 [exp] 723 / 0 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.005G093800 [exp] 680 / 0 AT1G65730 896 / 0.0 YELLOW STRIPE like 7 (.1) Potri.001G082400 [exp] 671 / 0 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.001G084400 [exp] 659 / 0 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10035194 pacid=23162516 polypeptide=Lus10035194 locus=Lus10035194.g ID=Lus10035194.BGIv1.0 annot-version=v1.0 ATGGGGAGCGAGATATCCGAATCACTGCTACCGGAACCTGACAAGGCGGCCAAGGTCGTCGGCGAGCGGGTCCCAGAGTGGAAGGAGCAGATCACGATAC GGGGCCTGGTTGTGAGCGCTTTGTTAGGTGGACTTTTCTGCATCATCACGCATAAGCTGAATCTCACCGTCGGAATTATTCCGTCACTGAATGTCGCTGC CGGTCTGCTTGGTTTCTTCTTAGTCAAATCCTGGACGGGATTCATGTCCAAACTGGGGTTTGACGTTGTTCCGTTTACAAAACAGGAAAATACGGTGATC CAAACCTGTGTTGTGGCTAGCTACGGCCTTGCCTTCAGCGGTGGATTTGGTTCGTACATGCTTGCTTTGGATGAGAGAACATACGAATTGATTGGTAAAG ATTATCCGGGCAATCGGGCAGAAGATGTGATTAACCCTGGATTAGGGTGGATGATTGGGTTTATGTTCATTGTCAGCTTTCTGGGGCTTTTTAGCCTTGT TCCACTCCGCAAGGTTATGGTCATGGATTATAAGCTTACATATCCAAGTGGCACTGCTACTGCAATGTTGATCAATAGTTTTCATACGGACACTGGAGCT GAGCTTGCTGGGAAACAAGTGAAGTGTCTCGGGAAGTACTTGAGCTTAAGTTTTGTTTGGAGCTGCTTCAAGTGGTTCTTCAGTGGTGTTGGTGATTCTT GTGGATTTGACAACTTCCCCAGTCTTGGTTTGACCCTTTTCAAGAATTCGTTTTACTTTGACTTTAGTCCAACTTATGTTGGATGTGGTCTTATTTGTCC GCACATTGTTAACTGCTCCTGTCTTTTTGGAGCTATCATTTCATGGGGTTTCCTGTGGCCCTTCGTCTCTCAGCGTGCTGGTGACTGGTATCCAGCTGAC CTCGGAAGCAATGATTTCAAGGGTCTCTATGGCTACAAGGTATTCATATCGATTGCCCTTATTCTTGGGGATGGCCTTTATAATTTGGTCAAGATTATCT GGATAAGTACAACAGAAATGTTCAACAAAAGCACAAAAGAACACAAGCTTCCCGTTATCACAGAGATTCAAGATGATGAGACTTCCAAAGTGCTACTGGA GCAGAAAATGAGAGATGAGGTATTTCTGAAAGATAGAATACCAACCTGGTCCGCAGCATCTGGATATGTCTGTTTGGCCGCAATATCAACTGCGACAATG CCATTGATCTTCCCACCTCTCAAGTGGTATTTGGTTCTGGCATGCTATTTAATCGCCCCTGCTCTCGCCTTCTGTAACTCCTATGGCACGGGGCTAACAG ACTGGAACTTGACATCAACCTACGGGAAAATCGGACTTTTTGTCATTGCTTCCATAATTGGACCAAACGGAGGAGTAGTTGGTGGTTTAGCAGCTTGTGG CGTGATGATGACCATTGTCTCGACAGCAGCCGATCTCATGCAGGATTTCAAGACCGGTTACCTTACACTATCATCGGCAAAGTCAATGTTCGTTAGCCAG TTGATCGGAACAGCTATGGGATGCGTGATCGCCCCTTTAACGTTCTGGTTATTCTGGAGTGCATTTGATATCGGATCGCCAGATGGACCGTACAAGGCCC CATATGCAGTGATATTCAGGGAAATGGCAATCTTAGGTGTGGAAGGCTTATCCGAACTTCCAAAGCATTGTCTTGCGATATGTTGTGCCTTCTTTGTAGC TGCATTGGTGATAAACCTACTTAGAGACGTTACTCCTAAGAAGATCTCCCAGTTTATCCCGATTCCCATGGCCATGGCGATCCCGTTCTACATTGGAGCT TATTTTGCAGTCGACATGTTCGTTGGGACGGTGATACTGTTCGTGTGGGAACGGATTAATCGGAAGGATTCGGAAGATTATGCCGGTGCAGTTGCGTCGG GGTTGATATGTGGGGATGGGATATGGACCATACCGTCGGCGATTCTGTCTCTTTTGAGGGTCAATCCTCCCATCTGTATGTACTTTGGCCCTGCTTTGAG TCGATGA
AA sequence Show only first row Show all	>Lus10035194 pacid=23162516 polypeptide=Lus10035194 locus=Lus10035194.g ID=Lus10035194.BGIv1.0 annot-version=v1.0 MGSEISESLLPEPDKAAKVVGERVPEWKEQITIRGLVVSALLGGLFCIITHKLNLTVGIIPSLNVAAGLLGFFLVKSWTGFMSKLGFDVVPFTKQENTVI QTCVVASYGLAFSGGFGSYMLALDERTYELIGKDYPGNRAEDVINPGLGWMIGFMFIVSFLGLFSLVPLRKVMVMDYKLTYPSGTATAMLINSFHTDTGA ELAGKQVKCLGKYLSLSFVWSCFKWFFSGVGDSCGFDNFPSLGLTLFKNSFYFDFSPTYVGCGLICPHIVNCSCLFGAIISWGFLWPFVSQRAGDWYPAD LGSNDFKGLYGYKVFISIALILGDGLYNLVKIIWISTTEMFNKSTKEHKLPVITEIQDDETSKVLLEQKMRDEVFLKDRIPTWSAASGYVCLAAISTATM PLIFPPLKWYLVLACYLIAPALAFCNSYGTGLTDWNLTSTYGKIGLFVIASIIGPNGGVVGGLAACGVMMTIVSTAADLMQDFKTGYLTLSSAKSMFVSQ LIGTAMGCVIAPLTFWLFWSAFDIGSPDGPYKAPYAVIFREMAILGVEGLSELPKHCLAICCAFFVAALVINLLRDVTPKKISQFIPIPMAMAIPFYIGA YFAVDMFVGTVILFVWERINRKDSEDYAGAVASGLICGDGIWTIPSAILSLLRVNPPICMYFGPALSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10035194 [exp]	0	1
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10029136 [exp]	4.4	0.9176
AT1G43130		LCV2	like COV 2 (.1)		Lus10018869 [exp]	4.7	0.9138
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10014615 [exp]	6.9	0.9059
AT1G49050			Eukaryotic aspartyl protease f...		Lus10042982 [exp]	8.7	0.8938
AT1G28050	CO	COL15	B-box type zinc finger protein...		Lus10002578 [exp]	10.9	0.8912
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013941 [exp]	14.1	0.9004
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10002589 [exp]	14.2	0.8846
AT4G25030			unknown protein		Lus10041414 [exp]	15.3	0.8908
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10003129 [exp]	16.2	0.8954
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10017318 [exp]	16.3	0.8940

Compare expression of checked genes

Lus10035194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.