Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14100 333 / 2e-115 ABCI11, ATNAP14 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) AT4G33460 93 / 3e-22 ABCI10, ATNAP13, EMB2751 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) AT5G52860 77 / 1e-15 ABCG8 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) AT1G65410 75 / 3e-15 ABCI13, TGD3, ATNAP11 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) AT3G47740 75 / 5e-15 ATATH2, ABCA3 A. THALIANA ABC2 HOMOLOG 2, ATP-binding cassette A3, ABC2 homolog 2 (.1) AT1G53270 74 / 9e-15 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) AT3G47780 74 / 2e-14 ABCA7, ATATH6 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) AT3G47790 74 / 2e-14 ABCA8, ATATH7 ATP-binding cassette A8, ABC2 homolog 7 (.1) AT1G67940 72 / 2e-14 ABCI17, AtSTAR1, ATNAP3 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) AT4G25750 73 / 3e-14 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032025 [exp] 361 / 4e-126 AT5G14100 303 / 1e-103 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) Lus10000827 [exp] 84 / 7e-19 AT4G33460 362 / 5e-127 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Lus10022035 [exp] 77 / 5e-18 AT5G14100 66 / 9e-15 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) Lus10035453 [exp] 77 / 4e-16 AT1G67940 371 / 1e-130 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Lus10006209 [exp] 78 / 7e-16 AT1G70610 939 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Lus10026992 [exp] 77 / 8e-16 AT1G65410 476 / 2e-169 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Lus10023612 [exp] 77 / 2e-15 AT3G47780 1202 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Lus10036857 [exp] 76 / 3e-15 AT1G70610 953 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Lus10020188 [exp] 74 / 1e-14 AT1G65410 500 / 2e-179 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G067804 [exp] 371 / 2e-130 AT5G14100 346 / 1e-120 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) Potri.005G062800 [exp] 89 / 7e-21 AT4G33460 346 / 5e-121 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Potri.014G137000 [exp] 86 / 5e-19 AT1G65410 483 / 2e-172 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Potri.002G212701 [exp] 84 / 3e-18 AT1G65410 483 / 2e-172 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Potri.018G132000 [exp] 82 / 4e-18 AT1G67940 390 / 3e-138 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Potri.015G063400 [exp] 71 / 1e-13 AT3G47780 1145 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.014G080200 [exp] 71 / 2e-13 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.012G069700 [exp] 71 / 2e-13 AT3G47780 1139 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.006G215100 [exp] 70 / 2e-13 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.002G156900 [exp] 70 / 2e-13 AT3G53510 950 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10035195 pacid=23162478 polypeptide=Lus10035195 locus=Lus10035195.g ID=Lus10035195.BGIv1.0 annot-version=v1.0 ATGGCGGCCTTTTCCACTCCCGGAATCCCCAGCTACTTCGTCGGCATCGGAACGATCCAATCACCGGCGCTGTTCTCTCGTCAGTTCCACTCCAGGCAAG CTCCAGTTCACATCCTCGTCTTGTGCTCTCCGCAGTGCGAATCATTTCACTTTCCATTAGTCGTTAGAAGTGTTAGGTATAGACCTCCTGGGACACAGCT CAACCTCTTGAACGATGTCAGTTTTTCTCTCCCAGAAAAGAGCCTTGGCTTGATTTTCGGGCAGAGTGGAAGTGGAAAAACTACTCTCCTGCAGCTTCTT GCAGGGTTGAACAAGCCTACTTCTGGTACCATTTGCATCCAAAAGTATGGCAGTGATGGAAGTCCAAGTGATGCTCCGGAGCTTCTTTCTCCTGAAAGAG TCGGTATAGTCTTTCAGTTTCCAGAGAGGTATTTTGTGACTGATACCATCCTGGACGAAGTAACATTTGGGTGGCCAAGGAAAAAAAGCACTCTTCAAGT AAGGGAGCAGCTTCTTTTAAATCTTCAGAGGGCTATTAACTGGGTTGGTCTGAATGGAATATCTTTGGATAAAGATCCTCAGTCTCTGAGTGGTGGATAC AAGCGCAGGCTTGCCCTGGCAATTCAATTAGTACAAGTACCAGATTTACTGATACTGGATGAGCCTCTTGCTGGTCTTGATTGGAAAGCTCGGGCAGATG TTGTAAAGCTTTTAAAGCAGCTGAAAAGAGAATTAACCGTGTTGGTGGTCAGCCATGACCTCAAAGAGTTCACCAGTCTTGTAGATCATTCATGGAGAAT GCAGATGGGAGGGTTTCTCGAAAAAGATGTCCTTCCTAATTAA
AA sequence Show only first row Show all	>Lus10035195 pacid=23162478 polypeptide=Lus10035195 locus=Lus10035195.g ID=Lus10035195.BGIv1.0 annot-version=v1.0 MAAFSTPGIPSYFVGIGTIQSPALFSRQFHSRQAPVHILVLCSPQCESFHFPLVVRSVRYRPPGTQLNLLNDVSFSLPEKSLGLIFGQSGSGKTTLLQLL AGLNKPTSGTICIQKYGSDGSPSDAPELLSPERVGIVFQFPERYFVTDTILDEVTFGWPRKKSTLQVREQLLLNLQRAINWVGLNGISLDKDPQSLSGGY KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKQLKRELTVLVVSHDLKEFTSLVDHSWRMQMGGFLEKDVLPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14100		ABCI11, ATNAP14	ARABIDOPSIS THALIANANON-INTRIN...		Lus10035195 [exp]	0	1
AT3G18680			Amino acid kinase family prote...		Lus10020884 [exp]	11.7	0.8747
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10033034 [exp]	16.4	0.8622
AT3G15900			unknown protein		Lus10023126 [exp]	16.9	0.8568
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10020296 [exp]	17.5	0.8518
AT3G01180		ATSS2	starch synthase 2 (.1)		Lus10033014 [exp]	29.3	0.7679
AT4G13220			unknown protein		Lus10022819 [exp]	31.7	0.8495
AT4G27390			unknown protein		Lus10038584 [exp]	32.2	0.8540
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005030 [exp]	35.7	0.8450
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012126 [exp]	38.8	0.8367
AT4G34090			unknown protein		Lus10041575 [exp]	40.0	0.8401

Compare expression of checked genes

Lus10035195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.