Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12300 291 / 4e-94 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 287 / 1e-92 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12330 278 / 4e-89 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G12310 274 / 2e-87 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT5G44620 263 / 4e-83 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G22710 261 / 1e-82 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 261 / 3e-82 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT5G07990 224 / 3e-68 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37340 186 / 4e-54 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT2G45570 183 / 9e-53 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024581 [exp] 639 / 0 AT4G12300 395 / 5e-134 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032026 [exp] 636 / 0 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032215 [exp] 611 / 0 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024580 [exp] 524 / 0 AT4G12310 344 / 2e-114 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) Lus10024578 [exp] 515 / 0 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032214 [exp] 506 / 6e-178 AT4G12320 433 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032213 [exp] 492 / 7e-173 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024577 [exp] 488 / 2e-171 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032211 [exp] 483 / 3e-169 AT4G12320 432 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118400 [exp] 384 / 4e-130 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.001G118500 [exp] 327 / 4e-108 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.003G114400 [exp] 315 / 3e-103 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 313 / 3e-102 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.013G073300 [exp] 226 / 8e-69 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G113900 [exp] 218 / 2e-66 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.018G051300 [exp] 204 / 1e-60 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G085000 [exp] 198 / 5e-58 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.005G037201 [exp] 196 / 1e-57 AT5G06900 382 / 6e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.005G037100 [exp] 196 / 1e-57 AT5G06900 383 / 4e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10035196 pacid=23162439 polypeptide=Lus10035196 locus=Lus10035196.g ID=Lus10035196.BGIv1.0 annot-version=v1.0 ATGCACGTGGTGGTTGGCTCACCGTCACTGGTTAACCAGGTTCGTGACCAGGACGTAACGTTTGCAGATCGCGATCCTCCGATTGCTGCAAAGATAATCA CCCACGGTGCGAATGACATCGCCTTCATATCCTACGGCTCTGACTGGAAGAAGCTGCGGAAGATCTTCGTGCAGGAGTTGTTGAGCAATGCGAAGTTGGA CGCTTCTTACATGTTGAGGAAGCAACAAGTTGAGAGGGCTGTTAAGGATGTGTACCTGAAGAGAGGTAAAGCTTTGGACTTTGGCCAGTTGGTGTTCATG ACGGTGTCAAACACTGTCCTGAGCATGATCTGGGGAAGCACGATCCATGGGGAAGAAGGCAAAATGTTTTTTGCCAAGATTAAGAAATTGGCAGGTGAAG AGATGGTGCTGGTTGCTGCACCCAACATCTCGGACCTCATTCCTGCACTTGCCAGGTTTGACTTGCAGGGGATAGAGAAGAAATCCAGGAAGCTGCATCA GGAATTCGATCAAGTTCTCAATTCTGTGATCAGCGAGCGGAGGAAGCTGGTTTTGGATTCGGGAGGCGAGTTCAAAGATGCTAAGGACTTCTTGCAGATT CTCCTAGATCTCAACAGCAATGGAGGAGATGCTGCATTATCAATTACAGACAGTCAACTCAAGGGCATTCTTCAAGATACGATCATCGGCAGAACAGACA CAACAGTAACGACGATAGAGTGGACAATGGCAATGTTGATGCAACATCCAGACGCAATGCAAAAGGTCTGCAAAGAACTAGATGAAGTAGTAGGAAGAAG AAGCATTGCGGAAGAGTTACATCTGCCGCAACTACACTACTTGGACGCAGTCATTAAGGAAACATTCCGCCTGCATCCACCACTGCCCATGCTGGTGCCG CGTTGCCCCAGCCAGGACTGCAAACTAGGAGGGTACACCATTCCAAAGGGTGTCACTGTATTCATTAACGCTTATGCAATCCACAGGGATCCAAAGGCTG GACCAGTCCTCTGGAATTCCGACCTAACAGGAAGGAGAGTCTGTGCAGGGCTTCCAATGGCGGAGAAGATGCTGAAATACGTTCTTGCTTCGCTGCTCCA CTCGTTTGAATGGAAGCTAGCACAGGGGACAGTAGAGACTTGCATCGCTTCTACACTCGTTTGA
AA sequence Show only first row Show all	>Lus10035196 pacid=23162439 polypeptide=Lus10035196 locus=Lus10035196.g ID=Lus10035196.BGIv1.0 annot-version=v1.0 MHVVVGSPSLVNQVRDQDVTFADRDPPIAAKIITHGANDIAFISYGSDWKKLRKIFVQELLSNAKLDASYMLRKQQVERAVKDVYLKRGKALDFGQLVFM TVSNTVLSMIWGSTIHGEEGKMFFAKIKKLAGEEMVLVAAPNISDLIPALARFDLQGIEKKSRKLHQEFDQVLNSVISERRKLVLDSGGEFKDAKDFLQI LLDLNSNGGDAALSITDSQLKGILQDTIIGRTDTTVTTIEWTMAMLMQHPDAMQKVCKELDEVVGRRSIAEELHLPQLHYLDAVIKETFRLHPPLPMLVP RCPSQDCKLGGYTIPKGVTVFINAYAIHRDPKAGPVLWNSDLTGRRVCAGLPMAEKMLKYVLASLLHSFEWKLAQGTVETCIASTLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10035196 [exp]	0	1
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10004691 [exp]	4.9	0.9133
AT3G47570			Leucine-rich repeat protein ki...		Lus10030903 [exp]	5.5	0.9127
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10032332 [exp]	6.0	0.9132
AT1G47710			Serine protease inhibitor (SER...		Lus10005089 [exp]	16.1	0.9249
AT3G51440			Calcium-dependent phosphotries...		Lus10041827 [exp]	16.5	0.9196
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10042494 [exp]	18.3	0.8845
AT3G47570			Leucine-rich repeat protein ki...		Lus10031043 [exp]	22.1	0.8485
					Lus10027011 [exp]	24.5	0.8629
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10019978 [exp]	26.1	0.8720
					Lus10022098 [exp]	26.5	0.8949

Compare expression of checked genes

Lus10035196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.