Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01930 748 / 0 Major facilitator superfamily protein (.1.2) AT5G14120 738 / 0 Major facilitator superfamily protein (.1) AT5G50520 479 / 3e-164 Major facilitator superfamily protein (.1) AT5G50630 479 / 3e-164 Major facilitator superfamily protein (.1) AT2G28120 303 / 3e-95 Major facilitator superfamily protein (.1) AT2G39210 286 / 1e-88 Major facilitator superfamily protein (.1) AT4G34950 278 / 7e-86 Major facilitator superfamily protein (.1) AT1G80530 275 / 1e-84 Major facilitator superfamily protein (.1) AT2G16660 260 / 3e-79 Major facilitator superfamily protein (.1) AT2G34350 139 / 5e-35 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032034 [exp] 1018 / 0 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2) Lus10025123 [exp] 543 / 0 AT5G14120 674 / 0.0 Major facilitator superfamily protein (.1) Lus10023961 [exp] 484 / 8e-166 AT5G14120 598 / 0.0 Major facilitator superfamily protein (.1) Lus10001678 [exp] 286 / 7e-89 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10017971 [exp] 283 / 1e-87 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1) Lus10041962 [exp] 278 / 9e-86 AT1G80530 715 / 0.0 Major facilitator superfamily protein (.1) Lus10017480 [exp] 270 / 8e-83 AT1G80530 702 / 0.0 Major facilitator superfamily protein (.1) Lus10028803 [exp] 270 / 8e-83 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1) Lus10025053 [exp] 260 / 4e-79 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G329100 [exp] 813 / 0 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.017G064201 [exp] 803 / 0 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.012G098900 [exp] 676 / 0 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 296 / 1e-92 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 291 / 8e-91 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.009G006400 [exp] 290 / 2e-90 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 288 / 1e-89 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 285 / 2e-88 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.003G012300 [exp] 282 / 2e-87 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 281 / 4e-87 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10035203 pacid=23162365 polypeptide=Lus10035203 locus=Lus10035203.g ID=Lus10035203.BGIv1.0 annot-version=v1.0 ATGGGGAAGATACAGGACAGGCTGACGGATTTCTTCAACAACAGATGGCTGGTGTTCGTGGCCGCAATGTGGATACAGTCCTGGGCTGGAATCGGCTATC TCTTCGGAAGCATTTCCCCTGTCATCAAGAGCTCCCTTGGTTACAATCAGAGGCAGCTCGCCAGTCTGGGAGTTGCTAAGGATCTTGGGGACAGCGTAGG CTTCTTGACTGGCAGTCTCTGCGAAATCTTACCCCTTTGGGGAGCTCTGTTAGTTGGTTCTTTCCAGAATCTGATTGGGTATGGTTGGGTTTGGCTCATC GTCACTGGTCGCACTCCTGCTTTGCCTCTCTGGGCTATGTGCGTTCTGATATTTATTGGGAACAATGGCGAAACATACTTCAACACTGTTGCATTGGTTT CTTGCGTGCAAAACTTCCCAAAGAGCCGGGGACCCGTCGTAGGAATACTGAAAGGATTCGCTGGCTTAAGTGGAGCGATCTTGACCCAGATATACACGAT GATACATTCCCCCGATCACGCATCTCTAATCTTCATGGTTGCAGTTGGACCAGGAATCATAGTCATTTCCCTCATGTTCTTCATCAGACCGGTTGGAGGT CACAGGCAAATCAGACCATCTGATGGGACGAGTTTCTCGTTTGTCTATAGTGTGTGCATTCTTCTAGCTGCTTATTTGATGGCAGTCATGCTTCTCGAAG ATCTAGTCCCGTTGAATAAAACCATAGTCATGACTTTCACCGCGATTCTCTTTGTCCTCCTTGCGATCCCGATTGTGATTCCTATATGGTTGAGTTTCTT CTCCCCCAACCGGAACGATCTGGCAGAAGAAGCTGCCCTACTTCTACCTCAGGAGCAGAAAGGAGAAGGTAGTAAATCGGATGAACAGGACGGTCATGAA GTGATATTGAGTGAGGTGGAAGACGAGAAGCCTAAGGAAATGGACTTACTTCCGGCATCAGAGAGGCATAAGAGAATTGCGCAGTTGCAAGCGAAACTGT TCCAGGCAGCTGCGGCTGGCGCAGTGAGGGTGAAGAGGAGGAGAGGTCCTCATAGAGGAGAGGACTTTACCTTGGGGCAGGCATTGATCAAGGCTGACTT TTGGCTTATCTTCTTCTCGCTTTTGTTAGGTTCTGGATCCGGGTTGACGATCATTGATAATCTCGGTCAGTTGAGTGGCTCACTTGGGTATGATAATACC CATGTCTTTGTGTCCATGATCAGCATATGGAACTTCCTCGGTCGTGTTGGTGGCGGTTACATCTCCGAGGTGGTCGTCAGGGATTACGCTTATCCTAGAC CAGTGACAATGGCGGTTGCCCAGTTTGTGATGGCATTTGGACATATCTTCTTTGCTTTCGACTGGCCTGGGGCAATGTACATTGGCACACTGTTGATAGG GCTTGGCTATGGATCACATTGGGCAATTGTCCCAGCTACTGCATCCGAGTTATTTGGTCTTAAGAAGTTTGGAGCCCTCTACAATTTCCTTACCCTAGCA AACCCTGCAGGCTCTCTCGTCTTTTCCGGTGTTATCGCAAGTGGCATATACGACCGTGAAGCTGAAAAGCAAGCCGGAATCCACAATTCGAATTTCCGGA TGTTCTCGAACTTCTTTGGTGCCGAGGATACACTCAAGTGTGAAGGCTCCGTGTGTTACTTCCTCACTTGCATGATCATGTCAGGATTTTGTGTCATTGC AGGTATATTGAGCTTGATACTCGTTCGTCGCACCAAGGTTGTCTACACGAACCTCTATGGAAAATCGCGTGCTTGA
AA sequence Show only first row Show all	>Lus10035203 pacid=23162365 polypeptide=Lus10035203 locus=Lus10035203.g ID=Lus10035203.BGIv1.0 annot-version=v1.0 MGKIQDRLTDFFNNRWLVFVAAMWIQSWAGIGYLFGSISPVIKSSLGYNQRQLASLGVAKDLGDSVGFLTGSLCEILPLWGALLVGSFQNLIGYGWVWLI VTGRTPALPLWAMCVLIFIGNNGETYFNTVALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMIHSPDHASLIFMVAVGPGIIVISLMFFIRPVGG HRQIRPSDGTSFSFVYSVCILLAAYLMAVMLLEDLVPLNKTIVMTFTAILFVLLAIPIVIPIWLSFFSPNRNDLAEEAALLLPQEQKGEGSKSDEQDGHE VILSEVEDEKPKEMDLLPASERHKRIAQLQAKLFQAAAAGAVRVKRRRGPHRGEDFTLGQALIKADFWLIFFSLLLGSGSGLTIIDNLGQLSGSLGYDNT HVFVSMISIWNFLGRVGGGYISEVVVRDYAYPRPVTMAVAQFVMAFGHIFFAFDWPGAMYIGTLLIGLGYGSHWAIVPATASELFGLKKFGALYNFLTLA NPAGSLVFSGVIASGIYDREAEKQAGIHNSNFRMFSNFFGAEDTLKCEGSVCYFLTCMIMSGFCVIAGILSLILVRRTKVVYTNLYGKSRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01930			Major facilitator superfamily ...		Lus10035203 [exp]	0	1
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10041144 [exp]	2.4	0.8666
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10010933 [exp]	6.7	0.8424
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	11.4	0.8369
AT2G45010			PLAC8 family protein (.1.2)		Lus10038926 [exp]	12.5	0.8388
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10019197 [exp]	13.0	0.7650
AT2G30050			transducin family protein / WD...		Lus10037571 [exp]	14.6	0.8470
AT3G11330		PIRL9	plant intracellular ras group-...		Lus10017948 [exp]	16.4	0.8258
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10005819 [exp]	34.2	0.7949
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10007274 [exp]	39.3	0.8080
AT3G07270			GTP cyclohydrolase I (.1.2)		Lus10003152 [exp]	40.1	0.7909

Compare expression of checked genes

Lus10035203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.