Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67400 244 / 5e-80 RHS19 root hair specific 19 (.1) AT4G37530 240 / 4e-79 Peroxidase superfamily protein (.1.2) AT5G14130 238 / 1e-77 Peroxidase superfamily protein (.1) AT4G37520 233 / 2e-75 Peroxidase superfamily protein (.1.2) AT3G49960 224 / 3e-72 Peroxidase superfamily protein (.1) AT2G18980 213 / 6e-68 Peroxidase superfamily protein (.1) AT4G30170 212 / 2e-67 Peroxidase family protein (.1) AT5G47000 187 / 2e-57 Peroxidase superfamily protein (.1) AT4G17690 184 / 1e-56 Peroxidase superfamily protein (.1) AT1G24110 168 / 2e-50 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032035 [exp] 367 / 2e-128 AT5G67400 394 / 3e-138 root hair specific 19 (.1) Lus10012540 [exp] 318 / 7e-109 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10011079 [exp] 236 / 2e-76 AT4G37530 479 / 2e-171 Peroxidase superfamily protein (.1.2) Lus10001442 [exp] 225 / 3e-72 AT4G30170 475 / 7e-170 Peroxidase family protein (.1) Lus10001622 [exp] 170 / 4e-51 AT2G18980 320 / 4e-109 Peroxidase superfamily protein (.1) Lus10039445 [exp] 166 / 2e-49 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1) Lus10005278 [exp] 169 / 9e-49 AT2G34060 441 / 3e-152 Peroxidase superfamily protein (.1) Lus10042144 [exp] 164 / 1e-48 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1) Lus10004234 [exp] 164 / 2e-48 AT1G24110 391 / 1e-136 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G064100 [exp] 300 / 4e-102 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.001G329200 [exp] 288 / 2e-97 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.007G053400 [exp] 236 / 6e-77 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.018G089900 [exp] 228 / 1e-73 AT4G30170 472 / 6e-169 Peroxidase family protein (.1) Potri.007G074700 [exp] 202 / 1e-63 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.012G076500 [exp] 177 / 5e-54 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.001G351000 [exp] 176 / 2e-53 AT3G28200 448 / 2e-159 Peroxidase superfamily protein (.1) Potri.010G036100 [exp] 172 / 4e-52 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1) Potri.012G042800 [exp] 166 / 1e-49 AT1G05260 336 / 2e-115 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.004G052100 [exp] 166 / 3e-49 AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10035204 pacid=23162416 polypeptide=Lus10035204 locus=Lus10035204.g ID=Lus10035204.BGIv1.0 annot-version=v1.0 ATGGGTTACTTCAGTTCCTCTACGTCGGCGGCCATGATTATGATCATCGTTGCGACTACCATCGCTGGGGGCGGCGGCGTGTCAGGCCAAGGACTGAGGG AGAATTTCTACGCGGGAAGTTGTCCAATGGTGGAGCCTATAGTACAGCAAGTGGTGGCGGCCAAAGCCGGCCGGCAGTTCCCCACCCTACCAGCCACTCT CCGCCTCTTCTTCCACGACTGCTTCGTTACTGGCTGCGATGCCTCAGTAATGGTGGCATCACCGAACGGAGACGCAGAGAAAGATGCTCTGGACAATCTA TCCCTGGCCGGCGACGGATTCGACGCCGTATCAAGAGCTAAAACAGCTGTAGAAGCTATATGCCCTGGAGTCGTTTCTTGTGCAGATATCATCGCCATCG CAGCTCGTGATGTTGTCGCCTTGGCAGGAGGCCCGACGTTCGCGGTGGAATTAGGGCGGAGGGACGGCATGATATCCAGCGTATCCCTCGTCGCCGGAAA CTTGCCGGAGCCAAACATGACCCTACCCGAACTCAACGCAATCTTCGCCAAACACAACCTCACCCAATTCGACATGATCGCGCTTTCGGGAGTTCACACG CTCGGCTTCTCCCACTGCAATCGATTCTTCAATCGCATCTACTCTTCCACAGTCGACCCTTCCCTGAACTCCACCTACGCCCAGCAGCTGATGACGGCCT GCCCGAGGAACGTGGATCCCAGCATCCGCAATCGACATGGATCCGACGACTCCGAGGGCATTCGACAACGTGTATTACCAGAATCTGGTCGAGGGGAAGG GTATGTTTAG
AA sequence Show only first row Show all	>Lus10035204 pacid=23162416 polypeptide=Lus10035204 locus=Lus10035204.g ID=Lus10035204.BGIv1.0 annot-version=v1.0 MGYFSSSTSAAMIMIIVATTIAGGGGVSGQGLRENFYAGSCPMVEPIVQQVVAAKAGRQFPTLPATLRLFFHDCFVTGCDASVMVASPNGDAEKDALDNL SLAGDGFDAVSRAKTAVEAICPGVVSCADIIAIAARDVVALAGGPTFAVELGRRDGMISSVSLVAGNLPEPNMTLPELNAIFAKHNLTQFDMIALSGVHT LGFSHCNRFFNRIYSSTVDPSLNSTYAQQLMTACPRNVDPSIRNRHGSDDSEGIRQRVLPESGRGEGYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67400		RHS19	root hair specific 19 (.1)		Lus10035204 [exp]	0	1
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Lus10037904 [exp]	1.0	0.9742
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	2.8	0.9667
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10007263 [exp]	7.5	0.9614
AT4G03965			RING/U-box superfamily protein...		Lus10015152 [exp]	8.5	0.9601
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10006463 [exp]	8.9	0.9612
AT5G65790	MYB	AtMYB68	myb domain protein 68 (.1)		Lus10028248 [exp]	10.2	0.9610
AT3G51440			Calcium-dependent phosphotries...		Lus10041827 [exp]	11.6	0.9552
AT5G18350			Disease resistance protein (TI...		Lus10018024 [exp]	12.0	0.9387
AT2G36950			Heavy metal transport/detoxifi...		Lus10022617 [exp]	14.4	0.9552
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10002827 [exp]	14.4	0.9499

Compare expression of checked genes

Lus10035204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.