Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48560 749 / 0 TZP5, IMR1, ALS, AHAS, CSR1 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) AT5G17380 100 / 3e-22 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029955 [exp] 829 / 0 AT3G48560 981 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10016751 [exp] 741 / 0 AT3G48560 1048 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032041 [exp] 636 / 0 AT3G48560 565 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022446 [exp] 588 / 0 AT3G48560 702 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10035359 [exp] 232 / 6e-75 AT3G48560 219 / 3e-69 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022445 [exp] 136 / 9e-37 AT3G48560 325 / 7e-108 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032040 [exp] 102 / 9e-25 AT3G48560 266 / 2e-85 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032037 [exp] 95 / 1e-22 AT3G48560 96 / 3e-23 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10028503 [exp] 83 / 1e-16 AT5G17380 916 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G098300 [exp] 763 / 0 AT3G48560 1052 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.015G097200 [exp] 755 / 0 AT3G48560 1058 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.004G094600 [exp] 95 / 2e-20 AT5G17380 904 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02775 [flax] [poplar] TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL0254 [flax] [poplar] THDP-binding PF02776 [flax] [poplar] TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CL0085 [flax] [poplar] FAD_DHS PF00205 [flax] [poplar] TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain
Representative CDS sequence Show only first row Show all	>Lus10035207 pacid=23162488 polypeptide=Lus10035207 locus=Lus10035207.g ID=Lus10035207.BGIv1.0 annot-version=v1.0 ATGCTGGACAGCATCCCTATCGTCGCCATCACGGGACAGGTCTCCCGCCGGATGATTGGGACCGACGCTTTCCAGGAAACTCCGATCGTCGAGGTGACGA AATCGATCACCAAACACAATTACCTCGTCGACGACGTGGAGGAAATCCCTAGAATCGTGAAGGAAGCGTTCTACATTGCTTCATCGGGGAGACCCGGTCC GGTTCTGATCGACATTCCGAAGGACGTTCAGCAGCAGCTTCTAACCCCTAATTGGGATGTACAAGTCAAACTCCCAGGCTATTCAGCTAGGTTACCAAAA ACGCCGAAAATCGAACAGCTGAAGCAGATCTTGAGGCTGATCTCCCAATCTAAGAGGCCGATTCTCTACGTAGGCGGCGGATCGTTGAATTGTAGTGAGG AATTGAAGAAATTCGTCGAGATTACGGGGATTCCTGTAGCGAGTACGCTCATGGGGCTAGGAAGTTTCCCTTGCGATCACGAGCTTTCCCTTCACATGCT GGGAATGCACGGGACAATGTACGCTAATTACGGTATCGACAGGGCTGATTTGCTTCTTGCCTTTGGTGTTCGTTTCGACGATCGTGCTACTGGAAAACTC GAGGCGTTTGCTAGTCGAGCTACGATTGTTCATATCGATATCGATTCGGCCGAGATCGGGAAGAACAAGCTGCCTCAGGTGTCAATGTGTGCTGATTTGA AGCCGGCATTGGAAGGGATGAACAGGTTATTGTTGGAAGAAGAGAAGATTCGAAATCTGGATTTGGATTTCTCAGATTGGAGGAATGAGATTCAGGAGCA GAAACTGAAGTATCCGTTAAGCTACAAGAGATTCGGGGAAGCAATTCCTCCACAGTACGCAATCAAGCTGCTCGATGAATTGACGCAAGGGAATGCAATT ATCAGTACTGGAGTTGGACAGCATCAAATGTGGGCAGCTCAGTTCTACAAGTACAAAAAGCCAAGGCAGTGGCTAACATCTGCGGGGATAGGTGCAATGG GGTTCGGGCTACCAGCCGCGATCGGGGCAGCAGTGGCCAACCCGGGCGCTGTCGTGGTGGACGTCGACGGGGACGGGAGTTTCATGATGAATCTTCAGGA GCTGGCGACGATCCGAGTGGAGAACTTGCCGGTGAAGATAATGATACTGAACAATCAGCATTTAGGGATGGCGGTGCAGTGGGAAGACAGGTTTTACAAG GCCAACAGGGCGCATACGTTCTTGGGGAATCCGGAGAATGAAGGGGAGATTTTTCCAGACATGTTGCGGTTTGCTGAAGGCTGTGGGATACCGGCAGCGA GGGTGACTATGATCGGCGAGCTTAGGGAAGGGATGAAGAAGATGTTGGAGACTCCGGGGCCTTATCTGTTGGACGTGATAGTGCCTCATCAGGAGCATGT TCTGCCGATGATTCCGAGTGGTGGGGCTTTTAAGGATGCTATTACTGAAGGAGATGGCAGAGCTTGGTCTTAG
AA sequence Show only first row Show all	>Lus10035207 pacid=23162488 polypeptide=Lus10035207 locus=Lus10035207.g ID=Lus10035207.BGIv1.0 annot-version=v1.0 MLDSIPIVAITGQVSRRMIGTDAFQETPIVEVTKSITKHNYLVDDVEEIPRIVKEAFYIASSGRPGPVLIDIPKDVQQQLLTPNWDVQVKLPGYSARLPK TPKIEQLKQILRLISQSKRPILYVGGGSLNCSEELKKFVEITGIPVASTLMGLGSFPCDHELSLHMLGMHGTMYANYGIDRADLLLAFGVRFDDRATGKL EAFASRATIVHIDIDSAEIGKNKLPQVSMCADLKPALEGMNRLLLEEEKIRNLDLDFSDWRNEIQEQKLKYPLSYKRFGEAIPPQYAIKLLDELTQGNAI ISTGVGQHQMWAAQFYKYKKPRQWLTSAGIGAMGFGLPAAIGAAVANPGAVVVDVDGDGSFMMNLQELATIRVENLPVKIMILNNQHLGMAVQWEDRFYK ANRAHTFLGNPENEGEIFPDMLRFAEGCGIPAARVTMIGELREGMKKMLETPGPYLLDVIVPHQEHVLPMIPSGGAFKDAITEGDGRAWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035207 [exp]	0	1
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Lus10018565 [exp]	1.4	0.8335
AT3G01180		ATSS2	starch synthase 2 (.1)		Lus10033014 [exp]	3.2	0.7811
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10010111 [exp]	7.2	0.7817
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032041 [exp]	8.8	0.7615
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10005592 [exp]	9.4	0.7444
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10011604 [exp]	11.8	0.7308
AT4G37200		HCF164	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10016780 [exp]	17.7	0.7861
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10015831 [exp]	21.5	0.7995
AT4G13150			unknown protein		Lus10038173 [exp]	25.5	0.7531
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10013001 [exp]	42.7	0.7499

Compare expression of checked genes

Lus10035207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.