Plant FIBer expression Database

Lus10035208 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G27050 215 / 2e-71 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010600
[exp]
106 / 5e-29 AT3G27050 61 / 8e-12 unknown protein
Lus10032042
[exp]
81 / 2e-12 AT3G27050 64 / 2e-13 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G329600
[exp]
264 / 1e-90 AT3G27050 231 / 3e-78 unknown protein
PFAM info
Representative CDS sequence
>Lus10035208 pacid=23162454 polypeptide=Lus10035208 locus=Lus10035208.g ID=Lus10035208.BGIv1.0 annot-version=v1.0
ATGGCTGCTTCGCAATTGCAAAGCTCAGGGATGCTGTCCGGGGAGCAGCTGCTTTACCTGTTCAATCGCTTCTCTGAACTCACTGCCCAGCCAGATGTAA
AGAGGAGAATTGCAGATGCTGTGGAAGAGAAACAGGAAGCTGTAGCTATTACTACAGCGCTTCAAGAGGGAATCTTTTTGGAAATGGGGGTTGATCCTAG
CTTCGGAATCTCTTGCTTGGGTAAAGTGAACGCTGTTTTTGAGAATGACAGGGATTTGGTGATTCAGTTTTACAAATTTGTGGCTTGTGAAGAGATGGCT
TGTGATGAGGCTGAACTTGGACCAGAAGAATTTGCTGATAAAATGCATAATCAAGAAAAGCTTCATGAGAAGGCAAGTTTCTTGAGTTTTTCTCTGGTAC
CGGATGTTCATTCAAGAATGCTGTTTAAACTGATCAAACTTCAAAAGTACTGGGTGTTCTTTTTTCTTTTGCAGCAACTGGAGATGCTAAAATACATGCG
TAAATTCCACTTGGATGATCAATCTGCTGTTCTTGATAAGGTGCATCAAAACCTGGAGAAGGCCAATTTCGACGCAGAGGCATCGGTGCTGCCATTGAAC
GAGATCGAAGAAACTGTACGAAGGAGGGTGTCCCCTTTATTCATGCCGGCCAACTAA
AA sequence
>Lus10035208 pacid=23162454 polypeptide=Lus10035208 locus=Lus10035208.g ID=Lus10035208.BGIv1.0 annot-version=v1.0
MAASQLQSSGMLSGEQLLYLFNRFSELTAQPDVKRRIADAVEEKQEAVAITTALQEGIFLEMGVDPSFGISCLGKVNAVFENDRDLVIQFYKFVACEEMA
CDEAELGPEEFADKMHNQEKLHEKASFLSFSLVPDVHSRMLFKLIKLQKYWVFFFLLQQLEMLKYMRKFHLDDQSAVLDKVHQNLEKANFDAEASVLPLN
EIEETVRRRVSPLFMPAN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G27050 unknown protein Lus10035208
[exp]
0 1
AT5G60335 Thioesterase superfamily prote... Lus10009162
[exp]
2.4 0.8376
AT4G35980 unknown protein Lus10041889
[exp]
2.4 0.8682
AT2G43280 FAR1_related Far-red impaired responsive (F... Lus10025517
[exp]
5.3 0.8105
AT5G12240 unknown protein Lus10026824
[exp]
6.8 0.8549
AT4G22330 ATCES1 Alkaline phytoceramidase (aPHC... Lus10032606
[exp]
7.7 0.8167
AT1G20430 unknown protein Lus10034561
[exp]
8.5 0.8238
AT5G19930 Protein of unknown function DU... Lus10017753
[exp]
9.5 0.8222
AT3G15790 MBD11, ATMBD11 methyl-CPG-binding domain 11 (... Lus10043263
[exp]
9.8 0.8251
AT1G64750 DSS1(I), ATDSS1... deletion of SUV3 suppressor 1(... Lus10030583
[exp]
11.2 0.8239
AT4G38495 unknown protein Lus10029400
[exp]
12.6 0.8061

Lus10035208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.