Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27060 533 / 0 ATTSO2, TSO2 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1) AT3G23580 481 / 3e-172 RNR2A ribonucleotide reductase 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032043 [exp] 646 / 0 AT3G27060 559 / 0.0 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1) Lus10004435 [exp] 485 / 2e-173 AT3G23580 556 / 0.0 ribonucleotide reductase 2A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063900 [exp] 578 / 0 AT3G27060 561 / 0.0 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1) Potri.001G329700 [exp] 573 / 0 AT3G27060 557 / 0.0 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1) Potri.008G201500 [exp] 480 / 8e-172 AT3G23580 576 / 0.0 ribonucleotide reductase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [flax] [poplar] Ferritin PF00268 [flax] [poplar] Ribonuc_red_sm Ribonucleotide reductase, small chain
Representative CDS sequence Show only first row Show all	>Lus10035209 pacid=23162589 polypeptide=Lus10035209 locus=Lus10035209.g ID=Lus10035209.BGIv1.0 annot-version=v1.0 ATGCCTTCTATCCCAGAAGAGCCGCTTCTCGCCTCAAACCCGGACCGATTCTGCATGTTCCCAATTGAATACCCTCAGATCTGGGAGATGTACAAGAAAG CTGAAGCCTCCTTCTGGACAGCCGAGGAGGTAGATCTCTCTCAAGACGTTCGCCATTGGGACGCCTTGACTGCCGACGAGCGCCACTTCATCACGCACGT CCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAATCTCGCCGGCAGGTTTATGAAGGAGGTCCAGGTAGCCGAGGCGCGTGCCTTCTACGGC TTCCAGATCGCGATTGAGAACATTCACTCCGAGATGTACAGCCTCCTGCTCGAGACCTACATCAAGGATTCGAAAGAAAAAAGCCGCCTTTTCCGCGCAA TCGAGACGATTCCTTGCGTCGCGAAGAAGGCGCAGTGGGCGTTGAAATGGATCGACGGCGGGGAGTCCTTTGCTGAGCGGCTGATAGCGTTCGCCTGCGT CGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCAATTTTCTGGCTGAAGAAGCGAGGGTTGATGCCTGGACTGACCTTCTCCAACGAGCTGATCTCGCGA GACGAAGGTCTGCACTGTGATTTCGCCTGTTTGCTGTACGGGATGATGAAGATGAAGCCCAGCGAGGAGCGCGTGAAGGGGATTGTCCGCGATGCGGTGG ATATCGAGAGGGAGTTTGTCTGTGACGCTCTCCCTTGCGCGTTGGTTGGGATGAATGGGGTGTTGATGAGTCAGTACATTGAGTTTGTAGCCGATAGGTT GCTGGACTCACTTGGCTACAGCAAAATCTACAACGTGATCAACCCCTTTGATTGGATGGAGCTGATCTCGCTGCAAGGGAAGACCAATTTCTTCGAGAAG AGAGTCGGGGAGTATCAGAAGGCATCTGTGATGTCAAGCTTGAATGGTGGCAATGTTGGGAACCATGAGTTCAAAATGGACGAAGACTTTTAG
AA sequence Show only first row Show all	>Lus10035209 pacid=23162589 polypeptide=Lus10035209 locus=Lus10035209.g ID=Lus10035209.BGIv1.0 annot-version=v1.0 MPSIPEEPLLASNPDRFCMFPIEYPQIWEMYKKAEASFWTAEEVDLSQDVRHWDALTADERHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYG FQIAIENIHSEMYSLLLETYIKDSKEKSRLFRAIETIPCVAKKAQWALKWIDGGESFAERLIAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISR DEGLHCDFACLLYGMMKMKPSEERVKGIVRDAVDIEREFVCDALPCALVGMNGVLMSQYIEFVADRLLDSLGYSKIYNVINPFDWMELISLQGKTNFFEK RVGEYQKASVMSSLNGGNVGNHEFKMDEDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Lus10035209 [exp]	0	1
AT5G43250	CCAAT	NF-YC13	"nuclear factor Y, subunit C13...		Lus10030832 [exp]	1.0	0.9508
AT5G65360			Histone superfamily protein (....		Lus10012744 [exp]	6.8	0.9147
AT1G67320		EMB2813	EMBRYO DEFECTIVE 2813, DNA pri...		Lus10000602 [exp]	10.1	0.9138
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10032315 [exp]	12.0	0.8500
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10017491 [exp]	15.4	0.9099
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031823 [exp]	15.4	0.8807
AT3G59550		ATSYN3, SYN3, A...	SISTER CHROMATID COHESION 1 PR...		Lus10037478 [exp]	16.7	0.9021
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10024838 [exp]	16.7	0.8895
AT2G19540			Transducin family protein / WD...		Lus10025341 [exp]	18.8	0.8650
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10028795 [exp]	23.5	0.8945

Compare expression of checked genes

Lus10035209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.