Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27110 489 / 1e-174 Peptidase family M48 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032044 [exp] 641 / 0 AT3G27110 503 / 2e-180 Peptidase family M48 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G330800 [exp] 493 / 4e-176 AT3G27110 498 / 2e-178 Peptidase family M48 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01435 [flax] [poplar] Peptidase_M48 Peptidase family M48
Representative CDS sequence Show only first row Show all	>Lus10035210 pacid=23162584 polypeptide=Lus10035210 locus=Lus10035210.g ID=Lus10035210.BGIv1.0 annot-version=v1.0 ATGGCCGCGCTGCTTCCTTATTACTCTTCCTGCTTCTCCCAAAGAAGATCGGTCTGTTCGTTGTCGTCTCCTCATCCTCTCGGTTTCTGCTATGGAGTCA CGGATTTTTCCAAGTGCAGCTCTGTTTCCAGTCGGGGAATAGTCTCGGAGAAGAAGGTGAACAATCGGTGTGTTGCTAGGGTTTCTATTGGTGGAGTTGA TTCTTCTTCTTCTTCCGTTGTATTTCGTGATCTAGACGCCGATGATTTCAGGCATCCTATCGACAAACAGAACACACTTCTGCTGAGGGCGATTCCAGGA TTGAATGAAATCGGAAAGGCTTTATTAGGAAGCTTGTCAGAACAAATTATGCTTCTCGAGAATATTGGAACCTCAGTTCTTGTCTCAGAAAATCAGCTTC AGGAACTTCATCAACTGATGACAGAGGCTGCGCAGATACTAAATGTTGAGGCTCCTGATCTTTATGTCCGGCAAAGTCCCATTCCAAATGCCTATACTTT AGCTATAAGCGGGAAGAAGCCGTTTGTTGTTGTGCACACCAGCCTAGTGGAGCTTCTTACAAGTAAAGAATTGCAGGCTGTCTTGGCTCATGAGTTAGGA CATCTAAAGTGTGATCATGGTGTATGGCTCACATTTGCAAATATTCTTACCTTGGGAGCTTATACAGTGCCTGGAATCGGTAGTATGATAGCTCAGACAT TAGAAGAACAGTTGTTTCGTTGGATCCGAGCAGCTGAGCTAACATGTGACCGTGCAGCACTTCTTGTTGCTCAAGACCCTAAGGTCGTCGTCTCTCTGTT GATGAAATTATGTGGGGGAAGCCCGTCGATTGCCGATCAACTCAACGTAGATGCGTTTCTGGAACAGGCACGTTCTTATGACAGAGCATCATCGAGTCCA ATAGGATGGTACATCAGCCGTGACTATTATCCATCTCTCATCAGAAATGCTCAGACAAGGCAACTTTCACATCCTCTGCCTGTTCTGCGTGCCCGTGAGA TTGATGAATGGTCGAGAAGCCAGGAGTACAAGAAGCTTCTGAAACGTGCAATGGGGATGAATCTTGCACAGAAAACCTAG
AA sequence Show only first row Show all	>Lus10035210 pacid=23162584 polypeptide=Lus10035210 locus=Lus10035210.g ID=Lus10035210.BGIv1.0 annot-version=v1.0 MAALLPYYSSCFSQRRSVCSLSSPHPLGFCYGVTDFSKCSSVSSRGIVSEKKVNNRCVARVSIGGVDSSSSSVVFRDLDADDFRHPIDKQNTLLLRAIPG LNEIGKALLGSLSEQIMLLENIGTSVLVSENQLQELHQLMTEAAQILNVEAPDLYVRQSPIPNAYTLAISGKKPFVVVHTSLVELLTSKELQAVLAHELG HLKCDHGVWLTFANILTLGAYTVPGIGSMIAQTLEEQLFRWIRAAELTCDRAALLVAQDPKVVVSLLMKLCGGSPSIADQLNVDAFLEQARSYDRASSSP IGWYISRDYYPSLIRNAQTRQLSHPLPVLRAREIDEWSRSQEYKKLLKRAMGMNLAQKT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27110			Peptidase family M48 family pr...		Lus10035210 [exp]	0	1
AT3G27110			Peptidase family M48 family pr...		Lus10032044 [exp]	1.0	0.9472
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10004485 [exp]	2.0	0.9082
AT3G10130			SOUL heme-binding family prote...		Lus10022712 [exp]	4.6	0.8903
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Lus10032727 [exp]	7.9	0.8195
AT5G59400			unknown protein		Lus10040799 [exp]	8.7	0.8248
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10023517 [exp]	11.0	0.8132
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10005367 [exp]	12.0	0.8198
AT5G61670			unknown protein		Lus10016713 [exp]	12.4	0.8246
AT2G42750			DNAJ heat shock N-terminal dom...		Lus10020749 [exp]	12.5	0.7897
					Lus10024153 [exp]	13.4	0.8191

Compare expression of checked genes

Lus10035210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.