Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27080 194 / 2e-62 TOM20-3 translocase of outer membrane 20 kDa subunit 3 (.1) AT1G27390 185 / 9e-59 TOM20-2 translocase outer membrane 20-2 (.1) AT5G40930 167 / 4e-52 TOM20-4 translocase of outer membrane 20-4 (.1) AT3G27070 159 / 9e-49 TOM20-1 translocase outer membrane 20-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032045 [exp] 413 / 2e-148 AT3G27080 211 / 2e-69 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10012532 [exp] 268 / 1e-84 AT3G01910 616 / 0.0 sulfite oxidase (.1.2.3) Lus10011363 [exp] 152 / 7e-46 AT3G27080 180 / 1e-57 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10006419 [exp] 144 / 7e-43 AT3G27080 180 / 1e-57 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10041558 [exp] 112 / 6e-31 AT3G27080 83 / 5e-20 translocase of outer membrane 20 kDa subunit 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G330200 [exp] 243 / 7e-82 AT1G27390 215 / 3e-71 translocase outer membrane 20-2 (.1) Potri.001G054900 [exp] 219 / 2e-72 AT1G27390 230 / 4e-77 translocase outer membrane 20-2 (.1) Potri.003G173400 [exp] 207 / 1e-67 AT3G27080 208 / 2e-68 translocase of outer membrane 20 kDa subunit 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF06552 [flax] [poplar] TOM20_plant Plant specific mitochondrial import receptor subunit TOM20
Representative CDS sequence Show only first row Show all	>Lus10035211 pacid=23162540 polypeptide=Lus10035211 locus=Lus10035211.g ID=Lus10035211.BGIv1.0 annot-version=v1.0 ATGGACATGTCGAGCGATTTGGACAGGATGCTCTTCTTCGAGCACGCTCGTAAAACAGCTGAGGCTACATATGCTACCAACCCGCTGGATGCCGAGTTCT GGAGTTATTCATTTGTTACTGCGGTGTCTAGCTTTCTAGTGCTTGAATTTGAACTTTATGGTGATTTCCGGGGTCAGAATTTGACGAGATGGGGTGGGTC TCTGATGGAGCTGGCTCAGTTTCAGAGTGTTCCAGATGCGAAGAAGATGATTCTAGATGGAATTTCCAAGTTAGACGAGGCATTGTCGATAAATCCCATG AAGCATGATGCTCTCTGGTGTCTGGGAAATGCTAATACATCTTATGCATTCTTAACCCCCAGCGAGGAGGAAGCAGATGCATATTTCAAGAAAGCAACTG TCTACTTTCAACAAGCTGTTGATGAGGATCCAAGCAATGAGTTGTATGCCAAGTCGCTAGAAGTGGCTGCTAAGGCACCAGAATTGCACTCAGAGATTCA TAAGCATGGTATGATGGACCAACAGGCATTAGGGGGTGGACCGGCGCCTGGACCTTCTGCCCCAATGGCCAAAAAGCCTGCAAAGAAAGAGAAGATCAGT GATACCACGTACGACGCATTAGGATGGGTTATTCTTGCGGTAGGGATTTTTGCAATAGTGGGAGTGGGATTCGCAAAATCCCAGATGCCTCCAGTTCCTC CGCCTGCCCGGTAA
AA sequence Show only first row Show all	>Lus10035211 pacid=23162540 polypeptide=Lus10035211 locus=Lus10035211.g ID=Lus10035211.BGIv1.0 annot-version=v1.0 MDMSSDLDRMLFFEHARKTAEATYATNPLDAEFWSYSFVTAVSSFLVLEFELYGDFRGQNLTRWGGSLMELAQFQSVPDAKKMILDGISKLDEALSINPM KHDALWCLGNANTSYAFLTPSEEEADAYFKKATVYFQQAVDEDPSNELYAKSLEVAAKAPELHSEIHKHGMMDQQALGGGPAPGPSAPMAKKPAKKEKIS DTTYDALGWVILAVGIFAIVGVGFAKSQMPPVPPPAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10035211 [exp]	0	1
AT4G29830		VIP3	vernalization independence 3, ...		Lus10017159 [exp]	1.7	0.9686
AT3G15000			cobalt ion binding (.1)		Lus10043130 [exp]	2.6	0.9585
AT3G25150			Nuclear transport factor 2 (NT...		Lus10022765 [exp]	2.8	0.9584
AT3G49910			Translation protein SH3-like f...		Lus10018139 [exp]	4.2	0.9638
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10013183 [exp]	5.5	0.9668
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10032045 [exp]	6.1	0.9353
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10032321 [exp]	7.2	0.9516
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10037445 [exp]	8.1	0.9588
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10000946 [exp]	8.5	0.9616
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Lus10024950 [exp]	9.2	0.9409

Compare expression of checked genes

Lus10035211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.