Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48200 418 / 9e-128 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032047 [exp] 1940 / 0 AT3G48200 457 / 2e-142 unknown protein Lus10039976 [exp] 418 / 8e-128 AT3G48200 1074 / 0.0 unknown protein Lus10008827 [exp] 370 / 3e-111 AT3G48200 925 / 0.0 unknown protein Lus10002461 [exp] 238 / 2e-69 AT3G48200 425 / 1e-139 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G330000 [exp] 1042 / 0 AT3G48200 492 / 3e-155 unknown protein Potri.015G079000 [exp] 467 / 3e-146 AT3G48200 1134 / 0.0 unknown protein Potri.012G087400 [exp] 425 / 2e-130 AT3G48200 1075 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035212 pacid=23162533 polypeptide=Lus10035212 locus=Lus10035212.g ID=Lus10035212.BGIv1.0 annot-version=v1.0 ATGCGTCTGTTCAAGTTTCTTGTACTTCTTACAGCAGTGATTGTGGCAGGGATCTTGGACTTAGTTCAATCTGCAGTAGTAATTCATTTCAGTGAGACGC CACCTAAGTTTTCTAGGCTCTCAACTGCTGTTTTCAAGTACTCAGTTGAAGGGGCGGATGGTAAGAATGCATGCCTCAATAATGGTTGCCTTATTGCTTG TGAGCTTGATGGCCGCACTTTGGGATCATGTTCGGCAGATTCTTCATTGTTGAGGAACTTGACTGTGAATCAGGAGCATACTTTCATGCTGAATGTTACC GCTCAGAATGGCGACATAAACTCTTCATCTTATTCATGGTTCATTGATACAGTTCCACCCACAGCGACATTATCTAGCGAAGATAACTACACAAATGTTG CAAAAGTAACCATTGATGTTACCTTCAGCGAGGCCTGCCCTGGGTTGGGTGGGTTCAAGTGCTTGAACTCATCATACTGTGACGTTCTAGTAGATGGTCC AGGTTTCATTCATGCTTCTTCGCTTCGTGCCATTTTACCGAACCGGAAGTATGAAGTTGACGTAGGCCTCTCCTTGGAACATATGTATGGCCGCATTGCT ATCCGAATGGTCAATGGTTTTTGTACAGATGAAGCTGGAAACTCTTTTACAAGGAGCAACAACTCTGTGATGATTGTTCACTTTGATAGGAGACCAGTGC TAGTAGATATGTGGATGCCTGTTTCATCCAATGTGCTGGTGATCAATGGAATGACAAGAACTGTTCTTGCAACAAACAAAACAGAGGACCTGAAAGTTTT CCTGGATTTTAGTATCCCCATAAAAAATTCAACAGAAGAAGTCCTAAGTGCAATATATGTGAAGTCAGCTTCTATATCACCTGCTCTTGGTGGACATCAG GGGAATCGCAAGTTTGCTTTTCAACTCACCAATGTATCTCGTGCTGAAATCATCACAGTTGAGCTTACAACCAGTTTGATAATTGGAAAGTCTGGCATTC CGACTTCACCAGTATCCCCACTTACAATTCTCTATGATTCAGAGAAGCCTGCGGTAGAGCTTAGCTCTGACTCAAAAAGTGTGACTAAAGCATCTGGCAT AAATTTGGCGGCGGAGTTCACAAAACCAGTTCTCGGCTTTGATTCGTCAATGATACAAGTAGACGGAGGGAAAATTACTAGGCAGCAAGCGAGGATTGAA CAAACTGCTCAAAGGGATTTATCTTTTTCTTTCTTCAGGTTTGAGGAACACTCAAGAGAACTATACACATTTACAGTCGTATCTGAAACTCAGAGAACAC TCTTTGTCTCTGTTCCTGCTGAGAAAGTAAGTGACATTTCCGGAAATCAAAATTTGGCATCCAACGGAATTCAACTGCATCATTACTCAACCCCTGCAAC ATTAATGTCACTGGATTCCTTCATCGGGGTTGGAGTGCTAGCAACCTCACTTGCAGCTGCTGGTCTTTCATTATCTTTAGCGAATATTGGGGTGATAGCT GCTTCCTCCTCGGGAGATGCAAATTATGTTGCATCAGATCCACGAACTAATCTGCATGGAATGCTGGGACATCTACAAGTCTTCGTGATGTCAGATTGGC TCTTAGCCAATCATCCGATTCAATATTCAGAGACAATAAAAGGCCTTACGTGGCTTATACCTCACGGAAAGCTACCATGGAGAAAGGATCAGACTTCGAT GTGGTCCAGCCATGTTAGTATGGCTGAAGGAAGAGAAGGTCCAGTGACATTAAAATTTCCTCATTCTTATGGCCCTCACAATAATCACTCGGAAAATTTC ACCAGCTATGCCTTTGACGGCTTTCGTGGACAAGATATAAGCACGAGAAGGCCTCATTTTGGGCAACCTCTCAATCCAGCCGAATATTTCACTTATTTCT TGAGAGGAGAGCCCATGGCTGCCAGCAGTGCTGTCAAGAAACTGGGTAATAGTAAGGGGTGGGACAACATGGCTATGAATCTGTTGTGGCTTGGTGTAGT TACAGGCAGTTTGCTTGTACTCCACGTATTGATAATACTTCTCCTCAGATGGAGGACAGGAACGTCAACTTTATGGATTATTTCGTTTTCAAGGTTCGGG ACCCTTCTTCTAATTCTCATGTTACCTTGTATTTCTCAGTCTGCAGCATTTCTCATAAAAGGCGGGACGGTTGGAGGAATAGTGGTTGGAGCTCTACTGC TGGTCATTCCAGCAGGATTTGTTTTATCTGTTCTACTATTCCTCCTACTCGCAATTCTTCCCGGAAACTTCGTGCAGTATGAGGAAATCAAGTACGTAGC AGTAAGGGAGGCATGGTATCAAAAGCTATGGTACTTCATAATCGACAGGCCAGTAAAGGGGAAATGGTTCTATAGAGATGGTGGTTTGACTTCGTCTTTT CTACAGAACTTCGGAATCCTTTTCGAGAATCAAAAGGGTCCTGCTTTGTTCTTCTTTGTCGATCAAAATGATCAAAGCACCTTTCCAAAGTGGAGTGAAA GCGAGAGAAGTGGGATTGGAAGAATGCGGGCCATCAGTTCGAATGACAGCAATGAAGAAGTCAAAGTTCCTGCATCTAGGAAGTATTTCGGGTATGCAAG ATCTTCGTACATCGTTCTTGATCTCATAAGAAGAGCCAGCTTGGGAGTAATATCAGGAGCTTCTTCTTCAAAGCATTATAAAACAGCAAACATTCTAGCC TTGACAATAACAATGACACAGTTTATCTATCTCACGGCTCTCAAGCCTTACATCAGAAGGCGAATCCACGCAGTAGAAAGCATTTCCCTGCTGTGTGAAT CGGGCATCTTCTTCATATCCATGGCCAATTCTTCGACAGGAGCTGGAGCCACAATCCTAGGAGATGTGATGCTGGGTCTCCTTTTGCTTTCGACCATTGC TCAAATCACAAACGAATGGTATAGTATGATCTCTTGCCTTTCGAGACTGTCGTGGAGGCAGCAGACATCTTTCGGGCACACGCTCGGGTTCGCAACCCGG GGTCTCTTTGTACCTTTCTTGCCGAAGAACAAATGGTCGAAAATTCTCCTGCCGAGTTCCTCCCAACCGAAAACAGGCTTTTCCAGCGTCCTTCCTTTGA GTCCAAACACTGATCATGGACTGAGGGACGAGAATGTATCGAGGCTTGATTCGTTCAGAGCCGCGTCTGCTACGGTGGTCCCGGTGGTCGGAGAGAATGC AAGTAGTGGTGATGCAGGAGGAGCAGGGAAGAGAAGGAAAGGAGCGATGATGATGGTGGAGCAGAGGAATGAGTTAAGGAAGTTGAGAGAGTTGGCAAGA GCTAGCTTCTACGGGGAAGGTAAGCGGAGAAATCAAATGGTTAAGGATCATCGAGCTGAGCATTTTCGTGGTGCGAACTTGTATGATAAAGGTGAAGGTG AAGCTGAAGCATCATCTTCCTCCAAGACGTAG
AA sequence Show only first row Show all	>Lus10035212 pacid=23162533 polypeptide=Lus10035212 locus=Lus10035212.g ID=Lus10035212.BGIv1.0 annot-version=v1.0 MRLFKFLVLLTAVIVAGILDLVQSAVVIHFSETPPKFSRLSTAVFKYSVEGADGKNACLNNGCLIACELDGRTLGSCSADSSLLRNLTVNQEHTFMLNVT AQNGDINSSSYSWFIDTVPPTATLSSEDNYTNVAKVTIDVTFSEACPGLGGFKCLNSSYCDVLVDGPGFIHASSLRAILPNRKYEVDVGLSLEHMYGRIA IRMVNGFCTDEAGNSFTRSNNSVMIVHFDRRPVLVDMWMPVSSNVLVINGMTRTVLATNKTEDLKVFLDFSIPIKNSTEEVLSAIYVKSASISPALGGHQ GNRKFAFQLTNVSRAEIITVELTTSLIIGKSGIPTSPVSPLTILYDSEKPAVELSSDSKSVTKASGINLAAEFTKPVLGFDSSMIQVDGGKITRQQARIE QTAQRDLSFSFFRFEEHSRELYTFTVVSETQRTLFVSVPAEKVSDISGNQNLASNGIQLHHYSTPATLMSLDSFIGVGVLATSLAAAGLSLSLANIGVIA ASSSGDANYVASDPRTNLHGMLGHLQVFVMSDWLLANHPIQYSETIKGLTWLIPHGKLPWRKDQTSMWSSHVSMAEGREGPVTLKFPHSYGPHNNHSENF TSYAFDGFRGQDISTRRPHFGQPLNPAEYFTYFLRGEPMAASSAVKKLGNSKGWDNMAMNLLWLGVVTGSLLVLHVLIILLLRWRTGTSTLWIISFSRFG TLLLILMLPCISQSAAFLIKGGTVGGIVVGALLLVIPAGFVLSVLLFLLLAILPGNFVQYEEIKYVAVREAWYQKLWYFIIDRPVKGKWFYRDGGLTSSF LQNFGILFENQKGPALFFFVDQNDQSTFPKWSESERSGIGRMRAISSNDSNEEVKVPASRKYFGYARSSYIVLDLIRRASLGVISGASSSKHYKTANILA LTITMTQFIYLTALKPYIRRRIHAVESISLLCESGIFFISMANSSTGAGATILGDVMLGLLLLSTIAQITNEWYSMISCLSRLSWRQQTSFGHTLGFATR GLFVPFLPKNKWSKILLPSSSQPKTGFSSVLPLSPNTDHGLRDENVSRLDSFRAASATVVPVVGENASSGDAGGAGKRRKGAMMMVEQRNELRKLRELAR ASFYGEGKRRNQMVKDHRAEHFRGANLYDKGEGEAEASSSSKT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48200			unknown protein		Lus10035212 [exp]	0	1
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013336 [exp]	1.7	0.9518
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Lus10020059 [exp]	3.5	0.9430
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10018360 [exp]	4.6	0.9424
AT4G33180			alpha/beta-Hydrolases superfam...		Lus10038076 [exp]	6.5	0.9323
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10038071 [exp]	6.6	0.9415
AT3G49400			Transducin/WD40 repeat-like su...		Lus10008595 [exp]	6.9	0.9132
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Lus10031892 [exp]	7.3	0.9254
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Lus10006765 [exp]	7.5	0.9271
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10033736 [exp]	8.9	0.9398
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003833 [exp]	9.2	0.9315

Compare expression of checked genes

Lus10035212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.