Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01910 581 / 0 AT-SO, ATSO, SOX sulfite oxidase (.1.2.3) AT1G37130 171 / 4e-47 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G77760 165 / 9e-45 GNR1, NIA1 nitrate reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032048 [exp] 692 / 0 AT3G01910 620 / 0.0 sulfite oxidase (.1.2.3) Lus10012532 [exp] 585 / 0 AT3G01910 616 / 0.0 sulfite oxidase (.1.2.3) Lus10041560 [exp] 494 / 7e-177 AT3G01910 546 / 0.0 sulfite oxidase (.1.2.3) Lus10035402 [exp] 166 / 4e-45 AT1G77760 1277 / 0.0 nitrate reductase 1 (.1) Lus10038977 [exp] 162 / 6e-44 AT1G77760 1397 / 0.0 nitrate reductase 1 (.1) Lus10027270 [exp] 159 / 8e-43 AT1G77760 1380 / 0.0 nitrate reductase 1 (.1) Lus10041561 [exp] 144 / 1e-42 AT3G01910 119 / 3e-35 sulfite oxidase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G330900 [exp] 616 / 0 AT3G01910 686 / 0.0 sulfite oxidase (.1.2.3) Potri.005G172400 [exp] 167 / 1e-45 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.002G088600 [exp] 162 / 8e-44 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00174 [flax] [poplar] Oxidored_molyb Oxidoreductase molybdopterin binding domain CL0159 [flax] [poplar] E-set PF03404 [flax] [poplar] Mo-co_dimer Mo-co oxidoreductase dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10035213 pacid=23162450 polypeptide=Lus10035213 locus=Lus10035213.g ID=Lus10035213.BGIv1.0 annot-version=v1.0 ATGCCAGGAATAAAGGGGCCGTCGGATTATTCCCAAGAACCACCTCGCCATCCTTCCCTTGTCATCAACTCCAAGCAACCTTTCAATGCTGAACCACCTC CTTCAGCCTTGGTCAACACTTACATCACACCTGTGGACTTCTTCTACAAGAGAAACCATGGCCCCATCCCGCTGGTTGATGGTATTCAAAGGTCGCTTCC AAAGTACAATGTCACAGCCACCTTGCAGTGTGCTGGTAACAGGAGGACTGCCATGAGCGAAGTACAGACAGTTAAAGGAGTTGGATGGGATATATCCGCA ATTGGAAATGCGGCCTGGGGAGGTGCCAAATTGGCTGATGTTCTTGAACTTGTTGGGATACATAACTTCACTTTCGTTACGAAATCTGGTGGGAAGCATG TTGAATTTTTCAGCATTGATAAGTGCAAGGAGGAGAATGGGGGACCTTACAAGGCATCGATTCCGCTCATTCAAGCCACAAATCCTGAAGCTGATGTCTT ACTTGCTTATGAGATGAATGGAGAGCCTTTAAATAGGGACCACGGATATCCATTACGGGTCGTTGTCCCAGGTGTAATCGGTGCACGTTCGGTCAAATGG TTGGATTCCATCAACATACTAGCCGGAGAATCTCAGGGCTTCTTCATGCAAAACGATTATAAGATGTTCCCACCTTTAGTGAATTGGGATAACATCAATT GGTCAACAAGGAGGCCACAAATGGATTTCCCTGTCCAATGTGCCATTTGTTCCTTGGAAGATCTGACTATTTTAAAGCAGCCTGGGAAGGTTGCCGTCAG TGGGTATGCAGTATCAGGAGGTGGTCGAGGAATCGAGAGGGTAGATGTGTCAATTGATGGTGGTAAGACCTGGGTGGAAGCTAAGAGGTACCAGAAGCCT GGAACTCATTATACATCAGATGATCTGAACAGCGACAAATGGGGGTGGGTTCTTTTTGAAGCCATAGTGGATCTCCCTCGTACCACAGAGATTGTGGCTA AAGCAGTGGATTCAGCAGCTAATGTGCAACCTGAAAGTGTGCAAGAAATCTGGAACCTGAGGGGGGTCCTGAACACATCGTGGCACCGGGTCCAAGTCCG GGTCGGTCGCTCCAGTCTGTAA
AA sequence Show only first row Show all	>Lus10035213 pacid=23162450 polypeptide=Lus10035213 locus=Lus10035213.g ID=Lus10035213.BGIv1.0 annot-version=v1.0 MPGIKGPSDYSQEPPRHPSLVINSKQPFNAEPPPSALVNTYITPVDFFYKRNHGPIPLVDGIQRSLPKYNVTATLQCAGNRRTAMSEVQTVKGVGWDISA IGNAAWGGAKLADVLELVGIHNFTFVTKSGGKHVEFFSIDKCKEENGGPYKASIPLIQATNPEADVLLAYEMNGEPLNRDHGYPLRVVVPGVIGARSVKW LDSINILAGESQGFFMQNDYKMFPPLVNWDNINWSTRRPQMDFPVQCAICSLEDLTILKQPGKVAVSGYAVSGGGRGIERVDVSIDGGKTWVEAKRYQKP GTHYTSDDLNSDKWGWVLFEAIVDLPRTTEIVAKAVDSAANVQPESVQEIWNLRGVLNTSWHRVQVRVGRSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10035213 [exp]	0	1
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031472 [exp]	17.6	0.7415
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Lus10012755 [exp]	20.8	0.7048
AT1G30755			Protein of unknown function (D...		Lus10017260 [exp]	25.9	0.7347
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10041978 [exp]	37.3	0.6791
AT1G53050			Protein kinase superfamily pro...		Lus10039836 [exp]	65.0	0.6871
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10018439 [exp]	74.2	0.6876
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10034843 [exp]	89.0	0.6604
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Lus10037447 [exp]	89.9	0.6755
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Lus10021565 [exp]	119.3	0.6569
AT5G52830	WRKY	ATWRKY27, WRKY2...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10039295 [exp]	145.3	0.6571

Compare expression of checked genes

Lus10035213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.