Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14170 554 / 0 CHC1 SWIB/MDM2 domain superfamily protein (.1) AT3G01890 460 / 3e-162 SWIB/MDM2 domain superfamily protein (.1) AT3G03590 49 / 3e-07 SWIB/MDM2 domain superfamily protein (.1) AT3G19080 46 / 2e-05 SWIB complex BAF60b domain-containing protein (.1) AT1G49520 45 / 5e-05 SWIB complex BAF60b domain-containing protein (.1) AT4G34290 42 / 0.0001 SWIB/MDM2 domain superfamily protein (.1) AT2G35605 41 / 0.0001 SWIB/MDM2 domain superfamily protein (.1) AT2G14880 39 / 0.0009 SWIB/MDM2 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032049 [exp] 658 / 0 AT5G14170 756 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10016761 [exp] 407 / 2e-140 AT5G14170 519 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10022456 [exp] 404 / 6e-139 AT5G14170 519 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10013893 [exp] 50 / 2e-07 AT2G14880 143 / 7e-45 SWIB/MDM2 domain superfamily protein (.1) Lus10002106 [exp] 45 / 2e-06 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1) Lus10019640 [exp] 48 / 5e-06 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10009333 [exp] 47 / 8e-06 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G331400 [exp] 580 / 0 AT5G14170 752 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.017G069300 [exp] 576 / 0 AT5G14170 768 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.012G096700 [exp] 488 / 4e-172 AT5G14170 564 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.015G094500 [exp] 477 / 6e-168 AT5G14170 580 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.005G134500 [exp] 60 / 5e-10 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.004G145200 [exp] 50 / 1e-06 AT1G49520 308 / 6e-103 SWIB complex BAF60b domain-containing protein (.1) Potri.009G106700 [exp] 48 / 4e-06 AT1G49520 301 / 5e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.001G297400 [exp] 46 / 5e-06 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1) Potri.009G092200 [exp] 40 / 0.0004 AT2G14880 169 / 7e-55 SWIB/MDM2 domain superfamily protein (.1) Potri.006G010700 [exp] 41 / 0.0006 AT4G22360 303 / 2e-100 SWIB complex BAF60b domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02201 [flax] [poplar] SWIB SWIB/MDM2 domain
Representative CDS sequence Show only first row Show all	>Lus10035214 pacid=23162344 polypeptide=Lus10035214 locus=Lus10035214.g ID=Lus10035214.BGIv1.0 annot-version=v1.0 ATGAAGCCGAATGCCGAACCTCCCACCTGGACTCTCAAAATTGTTGGGAGGATTCTGGAAGACGGGGTGGACCCTGACCAGCCTGGATTCGCTCATAAAC CGAATACAATGTACCCAAAGTTCTCGTCTTTCTTCAAGAGAGTGACCATTTCGTTAGATCAGAGACTGTATCCTGATAATAACATGATCGTGTGGGAGCA AGCACGTTCTCCTGCACCGCAAGAAGGTTTTGAAGTGAAGAGAAAGGGGGATACAGAGTTCACATTGCATGTTAGGTTGGATATGAATTATGTCCCTGAG AAATTTAAGTTATCTCCAGCTTTGACAGAAGTTCTTGGGATCGAGGTAGAAAGCCGTCCAAGAATAATAGCTGCAATCTGGCATTATGTAAAAGCTAGGA AACTGCATAGCCCCGAGGACCCTGCGTTCTTCAATTGCGATCCACCGTTGCAGAAAGTGTTCGGGGAGGCGAAAGTGAAGTTTACCATGGTTTCTCAGAA GATATCGCAGCATCTATTTCCTCCTCAACCGATACATTTGGAGCATCAGATCAAGCTTTCGGGGAATAGTCCTGTTGGGACAGCCTGCTATGATGTGTTG GTAGATGTGCCGTTTCCAATTCAGAGGGAATTGACAGCGTTGTTGGCAAATGCAGAGAAGAATAAGGAGATTGATGCCTGTGATGAATCAATATGTACTG CCATTAGGAAAATTCATGAGCACCGTAGAAGGCGAGCGTTCTTCCTAGGTTTTAGTCAGTCCCCTGTGGAGTTCATTAACGCTCTAATTGAATCGCAAAG CAAAGACTTGAAGCTCGTAGCGGGAGAAGCCAGTCGAAGTGTCGAGAAGGAACGCCGAGCAGAATTTTTCAACCAACCATGGGTTGAAGATGCAGTGATC CGATACTTGAACCGGAAGCCTGCCGCAGGAAATGAAGCTCCTGGAAGCTCATAG
AA sequence Show only first row Show all	>Lus10035214 pacid=23162344 polypeptide=Lus10035214 locus=Lus10035214.g ID=Lus10035214.BGIv1.0 annot-version=v1.0 MKPNAEPPTWTLKIVGRILEDGVDPDQPGFAHKPNTMYPKFSSFFKRVTISLDQRLYPDNNMIVWEQARSPAPQEGFEVKRKGDTEFTLHVRLDMNYVPE KFKLSPALTEVLGIEVESRPRIIAAIWHYVKARKLHSPEDPAFFNCDPPLQKVFGEAKVKFTMVSQKISQHLFPPQPIHLEHQIKLSGNSPVGTACYDVL VDVPFPIQRELTALLANAEKNKEIDACDESICTAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKLVAGEASRSVEKERRAEFFNQPWVEDAVI RYLNRKPAAGNEAPGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035214 [exp]	0	1
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Lus10014546 [exp]	1.0	0.8963
AT2G20330			Transducin/WD40 repeat-like su...		Lus10022855 [exp]	2.6	0.8102
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10036783 [exp]	2.8	0.8082
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10004129 [exp]	3.5	0.8550
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10032049 [exp]	3.7	0.8855
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10020889 [exp]	5.7	0.8396
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10032595 [exp]	6.0	0.7823
AT4G22350			Ubiquitin C-terminal hydrolase...		Lus10010490 [exp]	8.5	0.8285
AT1G74900		OTP43	organelle transcript processin...		Lus10042307 [exp]	9.5	0.7802
AT3G22520			unknown protein		Lus10006124 [exp]	11.4	0.7992

Compare expression of checked genes

Lus10035214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.