Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032049 [exp] 0 / 1 AT5G14170 756 / 0.0 SWIB/MDM2 domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G331400 [exp] 39 / 0.001 AT5G14170 752 / 0.0 SWIB/MDM2 domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035215 pacid=23162549 polypeptide=Lus10035215 locus=Lus10035215.g ID=Lus10035215.BGIv1.0 annot-version=v1.0 ATGTCTGGTGGGAATACTAACAACCCTCCGCCAAAGAGCCTAGGGCAGTCTTCATCTCCATTTGGGAATGTTGGGATTGTTAATTCGTCGGTGCCTTCTC CGAATCAAGGGTTCCCACAGTCACAACAAGGGTTTCAGAATCAGTTTCAGCAGATGTCTCAAGCTCAGGCTAATGTCCATGCTCAGCTGAAAGCACAGGC GGCTCATGCTGCTCAAGTTCAAGCTCACGCGCAATTTCAAGCGCATTTGCAGGCGCAAGGGATCTCTCTTGCTCCAAATCAGAATGCTGGTGGCATGGGG GGAGGCTTAGGTACTTCTTCGCCTTCGTTCGGAACCCGCGGTATGCCTAGTGCGAAGAGGATTGGTCAGAAGCCGCTAGGACGACCCAGCTCCACGAGAG AGTGGCGGCTATTCTACCTGAATCAGGACTTTATACTCAGCTTCTCGAGTTTGAGGCTCGTGTCGATGCTGCTCTAG
AA sequence Show only first row Show all	>Lus10035215 pacid=23162549 polypeptide=Lus10035215 locus=Lus10035215.g ID=Lus10035215.BGIv1.0 annot-version=v1.0 MSGGNTNNPPPKSLGQSSSPFGNVGIVNSSVPSPNQGFPQSQQGFQNQFQQMSQAQANVHAQLKAQAAHAAQVQAHAQFQAHLQAQGISLAPNQNAGGMG GGLGTSSPSFGTRGMPSAKRIGQKPLGRPSSTREWRLFYLNQDFILSFSSLRLVSMLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035215 [exp]	0	1
AT5G51280			DEAD-box protein abstrakt, put...		Lus10023252 [exp]	1.0	0.9157
AT4G26680			Tetratricopeptide repeat (TPR)...		Lus10009548 [exp]	3.5	0.8680
AT1G15710			prephenate dehydrogenase famil...		Lus10023121 [exp]	4.5	0.8810
AT5G47660	Trihelix		Homeodomain-like superfamily p...		Lus10038779 [exp]	4.5	0.8173
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10017633 [exp]	4.5	0.8640
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Lus10032227 [exp]	5.2	0.8794
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030869 [exp]	6.0	0.8491
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10036874 [exp]	7.9	0.8390
AT1G24270			unknown protein		Lus10003131 [exp]	9.0	0.7958
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Lus10027355 [exp]	9.4	0.8237

Compare expression of checked genes

Lus10035215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.