Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40870 815 / 0 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT3G27190 796 / 0 UKL2 uridine kinase-like 2 (.1) AT4G26510 697 / 0 UKL4 uridine kinase-like 4 (.1.2) AT1G55810 686 / 0 UKL3 uridine kinase-like 3 (.1.2.3) AT3G27440 647 / 0 UKL5 uridine kinase-like 5 (.1) AT1G73980 92 / 1e-19 Phosphoribulokinase / Uridine kinase family (.1) AT1G26190 82 / 3e-16 Phosphoribulokinase / Uridine kinase family (.1) AT3G53900 77 / 8e-16 UPP, PYRR PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) AT1G32060 76 / 1e-14 PRK phosphoribulokinase (.1) AT2G01460 46 / 4e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041569 [exp] 858 / 0 AT5G40870 853 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10032051 [exp] 714 / 0 AT5G40870 698 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10021310 [exp] 627 / 0 AT4G26510 753 / 0.0 uridine kinase-like 4 (.1.2) Lus10016989 [exp] 626 / 0 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2) Lus10022289 [exp] 550 / 0 AT3G27440 625 / 0.0 uridine kinase-like 5 (.1) Lus10009040 [exp] 88 / 4e-18 AT1G73980 971 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009678 [exp] 86 / 1e-17 AT1G73980 962 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030919 [exp] 82 / 2e-16 AT1G26190 1007 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030570 [exp] 82 / 3e-16 AT1G26190 1018 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G069600 [exp] 833 / 0 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G332100 [exp] 820 / 0 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G467800 [exp] 698 / 0 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3) Potri.011G165100 [exp] 697 / 0 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2) Potri.017G071200 [exp] 638 / 0 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1) Potri.015G055400 [exp] 89 / 2e-18 AT1G73980 953 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.006G091000 [exp] 84 / 9e-18 AT3G53900 379 / 7e-133 PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) Potri.008G110500 [exp] 85 / 2e-17 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.010G134400 [exp] 84 / 5e-17 AT1G26190 968 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.001G134000 [exp] 77 / 4e-15 AT1G32060 699 / 0.0 phosphoribulokinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [flax] [poplar] PRTase-like PF00156 [flax] [poplar] Pribosyltran Phosphoribosyl transferase domain CL0023 [flax] [poplar] P-loop_NTPase PF00485 [flax] [poplar] PRK Phosphoribulokinase / Uridine kinase family
Representative CDS sequence Show only first row Show all	>Lus10035216 pacid=23162472 polypeptide=Lus10035216 locus=Lus10035216.g ID=Lus10035216.BGIv1.0 annot-version=v1.0 ATGCCGGAGGAAACCGACTCCATCGACTATGCCATGGAGAAGGCCTCTGGTCCTCACTTCTCCGGCCTTCGCATCGACAGCCTCCTTTCTTCCCCTCCTG CTTCTTCCACTTCATCTCCTGCTCATCGTTCTTCTCCTACCGCTGCTGGTTCTGTTTTCGCTGACGCCAATGCTCTCAGGCAGCCCTTCGTCATTGGGGT TTCTGGAGGTACCGCTTCGGGGAAGACTACGGTGTGTGACATGATCATTCAGCAGCTCCACGATCACCGTGTTGTGCTTGTCAATCAGGATTCATTCTAT CGTGGATTGACGCCTCAAGAACTAGAACGCGTTCACGAATACAACTTCGATCATCCAGATGCATTTGACACTGACCAGCTTTTGGACTGCGTTGAAACAC TTAAGCGTGGGCTTCCTTATCAAGTCCCTATATATGACTTCAAGACCCATCAGCGTTGTTCAGATAGCTTTAGGCAGGTGAATGCTTCTGATGTTATTAT ATTAGAGGGTATATTGGTTTTCCATGATCAACGTGTTCGCAAGCTTATGAATATGAAGATCTTTGTTGATACAGATCCCGATGTGAGGCTTGCTCGCAGA ATTCGGCGTGACACTGTTGAGAGGGGTAGAGATATAAACTCTGTTCTTGAGCAGTATGCTAAATTTGTGAAGCCTGCTTTTGATGATTTCGTACTTCCTT CAAAGAAGTATGCCGATGTGATCATACCTCGTGGAGGTGATAATCATGTTGCCATTGATTTGATAGTTCAGCATATCCAGACGAAGCTTGGTCTACATGA CCTCTGCAAAATATATCCAAATGTGTATGTTATTCAAACAACTTTTCAGATTAGAGGCATGCATACCTTGATTCGAGACAGGGAAATTTCAAAGCATGAT TTTGTTTTTTACTCGGATAGACTTATTCGGCTGGTTGTTGAACATGGCCTTGGTCATTTGCCATTCACGGAGAAGCAAGTTGTTACCCCTACCGGGTCAG TTTATACTGGCGTTGACTTCTGCAAAAAATTATGCGGAGTTTCTATCGTACGAAGTGGAGAAAGCATGGAAAATGCATTGCGTGCATGTTGCAAAGGGAT AAAAATTGGTAAAATTTTAATCCACAGGGATGGCGACAACGGAAAGCAGCTTATATATGAGAAGCTTCCAAACGACATTTCCGAAAGGCACGTCCTGCTT CTAGATCCTGTTCTTGCCACTGGTAACTCGGCCAACCAAGCAATCGATCTACTCATACAGAAAGGAGTTCCAGAATCCCATATTATATTCTTAAACCTAA TCTCTGCACCCGAAGGCATCCACTGCGTCTGCAAGAGTTTTCCATCTCTTAAAATCGTGACTTCTGAAATCGATATAGCAATAAACGACGAATTTCGGGT TGTACCTGGGCTGGGAGAGTTCGGTGATCGGTACTTTGGGACTGATGATTGA
AA sequence Show only first row Show all	>Lus10035216 pacid=23162472 polypeptide=Lus10035216 locus=Lus10035216.g ID=Lus10035216.BGIv1.0 annot-version=v1.0 MPEETDSIDYAMEKASGPHFSGLRIDSLLSSPPASSTSSPAHRSSPTAAGSVFADANALRQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFY RGLTPQELERVHEYNFDHPDAFDTDQLLDCVETLKRGLPYQVPIYDFKTHQRCSDSFRQVNASDVIILEGILVFHDQRVRKLMNMKIFVDTDPDVRLARR IRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIQTKLGLHDLCKIYPNVYVIQTTFQIRGMHTLIRDREISKHD FVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLL LDPVLATGNSANQAIDLLIQKGVPESHIIFLNLISAPEGIHCVCKSFPSLKIVTSEIDIAINDEFRVVPGLGEFGDRYFGTDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10035216 [exp]	0	1
AT5G16790		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10030532 [exp]	7.3	0.7395
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Lus10011548 [exp]	9.5	0.6767
AT1G06270			Pentatricopeptide repeat (PPR)...		Lus10033632 [exp]	13.0	0.6493
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10000721 [exp]	40.1	0.6342
					Lus10023787 [exp]	78.5	0.6115
					Lus10039654 [exp]	81.5	0.6212
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10015573 [exp]	114.7	0.6039
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10004464 [exp]	143.3	0.5689
AT5G01160			RING/U-box superfamily protein...		Lus10017185 [exp]	147.2	0.5783
AT5G20900	ZIM	TIFY3B, JAZ12	jasmonate-zim-domain protein 1...		Lus10011929 [exp]	235.9	0.5558

Compare expression of checked genes

Lus10035216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.