Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27210 79 / 4e-18 unknown protein AT3G01860 73 / 2e-16 unknown protein AT5G40860 71 / 5e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032051 [exp] 310 / 2e-103 AT5G40870 698 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10041572 [exp] 138 / 1e-40 AT3G01860 77 / 1e-16 unknown protein Lus10011366 [exp] 48 / 9e-07 AT3G27210 39 / 0.001 unknown protein Lus10034680 [exp] 44 / 2e-05 AT3G27210 42 / 1e-04 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G332500 [exp] 111 / 2e-30 AT3G01860 96 / 3e-24 unknown protein Potri.010G058700 [exp] 77 / 5e-17 AT3G01860 83 / 4e-19 unknown protein Potri.008G176300 [exp] 69 / 3e-14 AT3G01860 67 / 2e-13 unknown protein Potri.012G096050 [exp] 42 / 0.0002 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035217 pacid=23162403 polypeptide=Lus10035217 locus=Lus10035217.g ID=Lus10035217.BGIv1.0 annot-version=v1.0 ATGGGTTCATGTGTATCGACAGTTGACAAGGGGACGGCGCCGCCGGCCAAAAAGACCGGACCGACGACAACGACAGCGTTTGGTTCCAAATCAAACAAGC AGGTTCTGCCTGAGTCCCCAGTCATGAATGGTGATAAGCTCTTCCTCAGCTACGGCAGCAAAGAGGAATCTTTTTTTGATTCCCAGCCCTGGCTTGAATC CGATGCTGAAGACGATTTCCATAGTGTCAGGGGAGATTTCACCCCATCTCGAGGGAGCACACCGGTCCATCACAACTTCTCCATCGCAACACCCCAACAC AACAGCCTCGTCGCCGTAGAGGTAAAATCTACAATTAGTTGCGTAACAGTCTCTTCTCCGGTGAAACAGAAGAAGAGACTGTCGGAGCTTTTCAGAGACG GCTCAAGGGATAATCTCAACTTATTAGACGACGACCAAGCTGGCGAGTTACCTTATTCGGACGACGGAAACCAAACCAAGATTGCCAATGATCAGAAGAA TGTGGAGGGTATTGAAATGTTTGACAAAGCTCAGAACAAGAACGCTAAATCGCCTAAACCAGTTCAATATTGTTGTCTCCACCTGTCATGGTAG
AA sequence Show only first row Show all	>Lus10035217 pacid=23162403 polypeptide=Lus10035217 locus=Lus10035217.g ID=Lus10035217.BGIv1.0 annot-version=v1.0 MGSCVSTVDKGTAPPAKKTGPTTTTAFGSKSNKQVLPESPVMNGDKLFLSYGSKEESFFDSQPWLESDAEDDFHSVRGDFTPSRGSTPVHHNFSIATPQH NSLVAVEVKSTISCVTVSSPVKQKKRLSELFRDGSRDNLNLLDDDQAGELPYSDDGNQTKIANDQKNVEGIEMFDKAQNKNAKSPKPVQYCCLHLSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27210			unknown protein		Lus10035217 [exp]	0	1
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10021556 [exp]	2.0	0.9008
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Lus10036024 [exp]	5.1	0.8199
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10020979 [exp]	5.2	0.8156
AT3G04970			DHHC-type zinc finger family p...		Lus10004149 [exp]	5.8	0.8829
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10008202 [exp]	6.2	0.8440
AT3G53810			Concanavalin A-like lectin pro...		Lus10001564 [exp]	6.7	0.8561
AT2G25280			unknown protein		Lus10001925 [exp]	7.2	0.8579
AT1G23260		MMZ1 ,UEV1A	UBIQUITIN E2 VARIANT 1A, MMS Z...		Lus10034611 [exp]	7.3	0.7903
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10032051 [exp]	7.4	0.7903
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10012034 [exp]	11.5	0.8529

Compare expression of checked genes

Lus10035217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.