Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01850 361 / 2e-125 Aldolase-type TIM barrel family protein (.1.2) AT1G63290 358 / 2e-124 Aldolase-type TIM barrel family protein (.1) AT5G61410 143 / 6e-40 RPE, EMB2728 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032052 [exp] 441 / 5e-156 AT1G63290 362 / 4e-128 Aldolase-type TIM barrel family protein (.1) Lus10001653 [exp] 152 / 3e-43 AT5G61410 476 / 6e-172 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10021627 [exp] 149 / 9e-42 AT5G61410 452 / 2e-162 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10015715 [exp] 144 / 5e-40 AT5G61410 457 / 4e-164 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10019083 [exp] 91 / 1e-20 AT5G61410 265 / 3e-89 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10019082 [exp] 49 / 3e-07 AT5G61410 136 / 4e-41 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G332700 [exp] 386 / 3e-135 AT3G01850 387 / 2e-138 Aldolase-type TIM barrel family protein (.1.2) Potri.015G062100 [exp] 146 / 5e-41 AT5G61410 494 / 4e-179 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00834 [flax] [poplar] Ribul_P_3_epim Ribulose-phosphate 3 epimerase family
Representative CDS sequence Show only first row Show all	>Lus10035219 pacid=23162588 polypeptide=Lus10035219 locus=Lus10035219.g ID=Lus10035219.BGIv1.0 annot-version=v1.0 ATGGTTATTGCATATAACACTGATGGACAAGTGATTAATGGTGAAGCTGGCCACTTTGTTTGCCAAGCTCCAATCTGTGTTGAAGCTTTTGCAGTTCTCC AAGCAGTTCTTCAAGAAAAACAAGATTTTCTTTTTCCAGCCGACATCTTTGTTGACAGGTTAGTATTGCTTTGTAGAATCCCCCACATCAACTGCATTGG AATGCTCGCTACACTAGCTTCTATCAAGAAGATCTTAATCAATAACTCATGGATTCAGCTGGAAACGTCGCCGTTTGGTAAATCCCGCGTCGTCTCGCTG TTGGTAGGTGAAGCAGTTGGTGTAAGCGACGGCGCCGTGTACAAGTCAAACTTCCCCACTTTCTCCTTTTCAGTCCTCTTTCCTTCTCACTTGGGACAAT CTTCACCGGGACAACAAAAAATGGCGCCGGCGGCGAAGATTGCTCCTTCGATGCTGTCCTCCGACTTCGCTAATCTTGCTACGGAAGCTCAGCGGATGCT GGACTGCGGCGCTGATTGGCTTCACATGGACATCATGGATGGCCACTTTGTCCCGAATCTAACCCTTGGTGCTCCGATCATCGAGAGCTTGAGGAAGCAC ACCAAGGCATATCTGGATTGCCATCTTATGGTGACAAACCCTCTTGATTATGTTGAACCTTTGGGTAAAGCTGGTGCCTCAGGATTTACATTTCATGTTG AGGCTGCAAAAGAAAACTGGGATGAAATAGTTCGAAAGATTAAAGCTAAGGGTATGAAGCCTGGTGTGTCACTTAAACCTGGAACACCCATTGAAGAAGT TTATCCTTTGATTGAAGGCGAAAATCCTGTGGAATTAGTTCTTGTGATGACTGTTGAACCTGGTTTTGGGGGACAGAAGTTCATGCCGGAAATGATGGAC AAAGTTCAGACGCTGAGACAAAAATATCCATCTTTGGATATAGAGGCAAGTCACTACTATCTCTTGTGTCTTTCATTTGCTTCTCTTGCTCCCTTCATAC TATTCACATTCCTAAGGAACCATCCAGAGAATATGGTGATGCAGGTGGATGGTGGGTTAGGTCCATCAACAATAGATGCAGCAGCAGCAGCTGGAGCAAA CTGCATTGTAGCAGGTAGCTCAGTGTTCGGAGCTCCTGAGCCGGCCGAAGTAATATCCCTTTTGAGAAATTCTGTCGAAGGAGCTCAGTAA
AA sequence Show only first row Show all	>Lus10035219 pacid=23162588 polypeptide=Lus10035219 locus=Lus10035219.g ID=Lus10035219.BGIv1.0 annot-version=v1.0 MVIAYNTDGQVINGEAGHFVCQAPICVEAFAVLQAVLQEKQDFLFPADIFVDRLVLLCRIPHINCIGMLATLASIKKILINNSWIQLETSPFGKSRVVSL LVGEAVGVSDGAVYKSNFPTFSFSVLFPSHLGQSSPGQQKMAPAAKIAPSMLSSDFANLATEAQRMLDCGADWLHMDIMDGHFVPNLTLGAPIIESLRKH TKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEAAKENWDEIVRKIKAKGMKPGVSLKPGTPIEEVYPLIEGENPVELVLVMTVEPGFGGQKFMPEMMD KVQTLRQKYPSLDIEASHYYLLCLSFASLAPFILFTFLRNHPENMVMQVDGGLGPSTIDAAAAAGANCIVAGSSVFGAPEPAEVISLLRNSVEGAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01850			Aldolase-type TIM barrel famil...		Lus10035219 [exp]	0	1
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10037552 [exp]	1.0	0.9759
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10031510 [exp]	2.0	0.9642
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009658 [exp]	3.5	0.9516
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10036486 [exp]	3.9	0.9550
AT5G03700			D-mannose binding lectin prote...		Lus10014371 [exp]	3.9	0.9573
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10011229 [exp]	5.1	0.9470
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009657 [exp]	5.3	0.9512
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10015188 [exp]	6.0	0.9555
AT1G70250			receptor serine/threonine kina...		Lus10025555 [exp]	7.2	0.9359
AT5G15270			RNA-binding KH domain-containi...		Lus10036767 [exp]	7.5	0.9455

Compare expression of checked genes

Lus10035219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.